Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GO485_RS12020 Genome accession   NZ_CP046904
Coordinates   2878839..2880281 (-) Length   480 a.a.
NCBI ID   WP_158206731.1    Uniprot ID   -
Organism   Pseudoduganella flava strain DSM 26639     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2873839..2885281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO485_RS12010 (GO485_11990) - 2874061..2875164 (-) 1104 WP_145874386.1 ribonucleotide-diphosphate reductase subunit beta -
  GO485_RS12015 (GO485_11995) - 2875295..2878240 (-) 2946 WP_145874387.1 ribonucleoside-diphosphate reductase subunit alpha -
  GO485_RS12020 (GO485_12000) pilR 2878839..2880281 (-) 1443 WP_158206731.1 sigma-54 dependent transcriptional regulator Regulator
  GO485_RS12025 (GO485_12005) - 2880318..2881985 (-) 1668 WP_145874389.1 nitrogen regulation protein NR(II) -
  GO485_RS12030 (GO485_12010) - 2882003..2882263 (-) 261 WP_145874390.1 PP0621 family protein -
  GO485_RS12035 (GO485_12015) - 2882260..2883063 (-) 804 WP_145874391.1 inner membrane protein YpjD -
  GO485_RS12040 (GO485_12020) - 2883105..2883902 (-) 798 WP_145874392.1 ABC transporter ATP-binding protein -
  GO485_RS12045 (GO485_12025) - 2883904..2884725 (-) 822 WP_145874393.1 ABC transporter permease -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 51511.21 Da        Isoelectric Point: 4.8483

>NTDB_id=409248 GO485_RS12020 WP_158206731.1 2878839..2880281(-) (pilR) [Pseudoduganella flava strain DSM 26639]
MLVVDDEDDLRELLEITLLKMGLDVDSAADLRHARALLAGADYDLVLTDMRLPDGLGLELVREIASSGRNTPVAVVTAFG
SAENAVVALKAGAFDYVTKPLQLDQLRMMVQSALKLNTAHSPAAAPEPADSRLKGSSTAMQALRAQIARLARSMAPIAIT
GESGSGKELAAREIHAQSSRADKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAANGGTLMLDEVADLPLP
MQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQNLARCVEEGKFRQDLFYRLNVIELSLPPLRDRLDDLPVLIEAILA
RLSAAGGQKAVLGPGVLDALRSYSFPGNVRELENVLERALAFSNDGVIDVNDLSLKGAKLADAPAGAPVAPALTEVPGLS
TAAVPGAMPAPPGERMPPLPDLAVLPSNLPAYLERVEREIIVRALQETQYNRTQAAQLLGISFRQLRYQMQKLGIQEPEG

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=409248 GO485_RS12020 WP_158206731.1 2878839..2880281(-) (pilR) [Pseudoduganella flava strain DSM 26639]
GTGCTCGTGGTGGACGACGAAGACGACCTGCGCGAGCTGCTCGAGATCACGCTGCTCAAGATGGGCCTGGACGTCGACAG
CGCCGCCGACCTGCGCCACGCCAGGGCGCTGCTGGCGGGCGCCGACTACGACCTGGTGCTGACGGACATGCGCCTGCCGG
ACGGCCTGGGGCTGGAGCTCGTGCGCGAGATCGCGAGCAGCGGCCGCAATACGCCGGTGGCCGTCGTCACCGCGTTCGGC
AGCGCGGAAAACGCCGTCGTCGCGCTGAAGGCGGGCGCGTTCGACTACGTGACGAAGCCGCTGCAGCTGGACCAGTTGCG
CATGATGGTGCAGTCGGCGCTGAAACTGAACACGGCGCACAGCCCGGCCGCGGCGCCCGAACCGGCCGACAGCCGGCTCA
AAGGCAGCTCGACCGCCATGCAGGCGCTGCGCGCGCAGATCGCCCGTCTGGCACGGTCGATGGCGCCGATCGCCATCACC
GGCGAATCCGGTTCGGGCAAGGAACTGGCCGCGCGCGAGATCCACGCGCAAAGTTCGCGGGCCGACAAGCCGTTCATCGC
CGTCAACTGCGGCGCGATTCCCGAGGCGCTGATGGAGGCCGAGTTCTTCGGCTACCGCAAGGGCGCGTTCACCGGTGCGG
CGGACGAGCGGGACGGCTTCTTCCAGGCCGCCAACGGCGGCACGCTGATGCTCGACGAAGTGGCCGACCTGCCGCTGCCG
ATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAACGCCGGGTGCGCAAGATCGGCGCCACGGCCGAGGAGCCGGTGGACGT
GCGCATCGTCAGCGCCACCCACCAGAACCTGGCGCGCTGCGTGGAAGAGGGCAAGTTCCGGCAAGACCTGTTCTACCGGC
TGAACGTGATCGAGCTGTCGCTGCCGCCGTTGCGCGACCGGCTCGACGATCTGCCCGTGCTGATCGAAGCGATCCTCGCC
CGGCTGTCCGCCGCGGGCGGCCAGAAGGCGGTATTGGGGCCCGGCGTGCTGGATGCGCTGCGCAGCTACAGCTTCCCCGG
CAATGTGCGCGAGCTGGAAAACGTGCTGGAACGGGCGCTGGCGTTTTCCAACGATGGCGTGATCGACGTGAACGACCTGT
CGCTGAAAGGCGCGAAGCTGGCCGATGCGCCGGCCGGGGCACCCGTCGCGCCCGCGCTGACCGAGGTGCCGGGGTTGTCC
ACTGCGGCGGTACCCGGTGCCATGCCCGCGCCGCCGGGCGAGCGCATGCCGCCGCTGCCGGACCTCGCGGTGCTGCCGTC
GAACCTGCCGGCCTACCTGGAGCGGGTCGAGCGCGAGATCATCGTCCGGGCGCTGCAGGAGACCCAGTACAACCGCACCC
AGGCCGCGCAACTGCTCGGCATCAGCTTCCGGCAGCTGCGCTACCAGATGCAGAAGCTGGGCATCCAGGAGCCGGAAGGC
TGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(433-473)

Response regulator receiver domain (Response_reg)

(2-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.571

99.167

0.531
  pilR Acinetobacter baumannii strain A118

42.647

99.167

0.423

Multiple sequence alignment