Detailed information NTG0040918

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SSUD12_RS10660
• Genome accession: NC_017621
• Coordinates: 2160443..2161537 (+)
• Length: 364 a.a.
• NCBI ID: WP_014638862.1
• Uniprot ID: -
• Organism: Streptococcus suis D12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2155443..2166537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUD12_RS10625 (SSUD12_2147)	-	2155522..2156151 (-)	630	WP_014638859.1	Rha family transcriptional regulator	-
SSUD12_RS10630 (SSUD12_2148)	-	2156205..2156369 (-)	165	Protein_2053	helix-turn-helix domain-containing protein	-
SSUD12_RS10635 (SSUD12_2149)	-	2156387..2156587 (-)	201	WP_002936170.1	helix-turn-helix transcriptional regulator	-
SSUD12_RS10640 (SSUD12_2150)	-	2156791..2157297 (+)	507	WP_002936171.1	helix-turn-helix domain-containing protein	-
SSUD12_RS10645 (SSUD12_2151)	-	2157751..2158581 (+)	831	WP_013730692.1	KilA-N domain-containing protein	-
SSUD12_RS10650 (SSUD12_2152)	-	2158747..2159919 (+)	1173	WP_014638860.1	tyrosine-type recombinase/integrase	-
SSUD12_RS10655 (SSUD12_2153)	yaaA	2160057..2160440 (+)	384	WP_014638861.1	S4 domain-containing protein YaaA	-
SSUD12_RS10660 (SSUD12_2154)	recF	2160443..2161537 (+)	1095	WP_014638862.1	DNA replication/repair protein RecF	Machinery gene
SSUD12_RS10665 (SSUD12_2155)	guaB	2161608..2163089 (-)	1482	WP_014638863.1	IMP dehydrogenase	-
SSUD12_RS10670 (SSUD12_2156)	trpS	2163321..2164346 (-)	1026	WP_014638864.1	tryptophan--tRNA ligase	-
SSUD12_RS10675 (SSUD12_2158)	-	2164701..2165573 (+)	873	WP_014638866.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42191.30 Da
• Isoelectric Point: 7.2518

>NTDB_id=40918 SSUD12_RS10660 WP_014638862.1 2160443..2161537(+) (recF) [Streptococcus suis D12]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYALALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSHVIQHRIDFLKKLEEFGNRKVQDISDKREELTIEYQSSIKFTTSVNLIDIFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=40918 SSUD12_RS10660 WP_014638862.1 2160443..2161537(+) (recF) [Streptococcus suis D12]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGCTTTAGCTTTAACACGAAGCCATCGAA
CACGAACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCACTTGACATTCACTTGACAGATAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCAAAACTTTCTAATTA
CATTGGACATATGAACGTCGTCCTATTTGCTCCAGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTAAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCATGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGATATTTCAGATA
AGAGAGAGGAACTAACTATCGAATATCAATCCTCAATTAAGTTTACTACTTCTGTCAATTTAATTGACATATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGTCAAGGACAACACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATCG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAGCTACTCGAAACTATTACAGATACGATTCAAACATTTATTACAACGACCTCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	69.529	99.176	0.69
recF	Bacillus subtilis subsp. subtilis str. 168	42.703	100	0.434