Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GQO96_RS01935 Genome accession   NZ_CP046898
Coordinates   413578..414213 (-) Length   211 a.a.
NCBI ID   WP_002125534.1    Uniprot ID   A0A429LTT3
Organism   Acinetobacter baumannii strain A1429     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408578..419213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQO96_RS01900 (GQO96_01895) mlaE 408914..409690 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  GQO96_RS01905 (GQO96_01900) - 409690..410370 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GQO96_RS01910 (GQO96_01905) - 410397..411038 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  GQO96_RS01915 (GQO96_01910) - 411050..411337 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  GQO96_RS01920 (GQO96_01915) - 411407..412420 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  GQO96_RS01925 (GQO96_01920) - 412578..413159 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  GQO96_RS01930 (GQO96_01925) - 413174..413575 (+) 402 WP_140955207.1 NUDIX hydrolase -
  GQO96_RS01935 (GQO96_01930) comF 413578..414213 (-) 636 WP_002125534.1 ComF family protein Machinery gene
  GQO96_RS01940 (GQO96_01935) recG 414206..416251 (-) 2046 WP_032030097.1 ATP-dependent DNA helicase RecG -
  GQO96_RS01945 (GQO96_01940) - 416272..417087 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  GQO96_RS01950 (GQO96_01945) adeT2 417167..418153 (+) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24551.67 Da        Isoelectric Point: 9.7140

>NTDB_id=409177 GQO96_RS01935 WP_002125534.1 413578..414213(-) (comF) [Acinetobacter baumannii strain A1429]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLVSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=409177 GQO96_RS01935 WP_002125534.1 413578..414213(-) (comF) [Acinetobacter baumannii strain A1429]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTCCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTGTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429LTT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986

Multiple sequence alignment