Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GQO96_RS01570 Genome accession   NZ_CP046898
Coordinates   336739..337557 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A1429     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331739..342557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQO96_RS01535 (GQO96_01535) - 332321..332451 (-) 131 Protein_292 hypothetical protein -
  GQO96_RS01540 (GQO96_01540) rpoZ 332490..332768 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GQO96_RS01545 (GQO96_01545) gmk 332841..333470 (-) 630 WP_000015937.1 guanylate kinase -
  GQO96_RS01550 (GQO96_01550) ispH 333593..334543 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GQO96_RS01555 (GQO96_01555) fimU 334713..335186 (+) 474 WP_032030052.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GQO96_RS01560 (GQO96_01560) pilV 335180..335740 (+) 561 WP_086266985.1 type IV pilus modification protein PilV Machinery gene
  GQO96_RS01565 (GQO96_01565) pilW 335741..336742 (+) 1002 WP_032030055.1 PilW family protein Machinery gene
  GQO96_RS01570 (GQO96_01570) pilX 336739..337557 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GQO96_RS01575 (GQO96_01575) pilY1 337569..341423 (+) 3855 WP_032030056.1 PilC/PilY family type IV pilus protein Machinery gene
  GQO96_RS01580 (GQO96_01580) pilY2 341436..341918 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  GQO96_RS01585 (GQO96_01585) pilE 341915..342340 (+) 426 WP_032030057.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=409173 GQO96_RS01570 WP_000149374.1 336739..337557(+) (pilX) [Acinetobacter baumannii strain A1429]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=409173 GQO96_RS01570 WP_000149374.1 336739..337557(+) (pilX) [Acinetobacter baumannii strain A1429]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment