Detailed information
Bioinformatically predicted
Overview
| Name | rcrR | Type | Regulator |
| Locus tag | GP482_RS04195 | Genome accession | NZ_CP046875 |
| Coordinates | 853916..854356 (-) | Length | 146 a.a. |
| NCBI ID | WP_039696758.1 | Uniprot ID | - |
| Organism | Streptococcus ruminicola strain CNU_77-61 | ||
| Function | regulate competence (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 839851..869128 | 853916..854356 | within | 0 |
Gene organization within MGE regions
Location: 839851..869128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GP482_RS04150 (GP482_04150) | - | 839851..840696 (+) | 846 | WP_158914019.1 | aldo/keto reductase | - |
| GP482_RS04155 (GP482_04155) | - | 840746..843694 (-) | 2949 | WP_158914021.1 | type III restriction-modification system endonuclease | - |
| GP482_RS04160 (GP482_04160) | - | 843708..845828 (-) | 2121 | WP_158914023.1 | site-specific DNA-methyltransferase | - |
| GP482_RS04165 (GP482_04165) | - | 846281..847632 (+) | 1352 | WP_158913146.1 | IS3 family transposase | - |
| GP482_RS04170 (GP482_04170) | - | 847682..848908 (-) | 1227 | WP_158914025.1 | HAMP domain-containing sensor histidine kinase | - |
| GP482_RS04175 (GP482_04175) | - | 848917..849597 (-) | 681 | WP_158914027.1 | response regulator transcription factor | - |
| GP482_RS04180 (GP482_04180) | - | 849600..850235 (-) | 636 | WP_158914029.1 | GTP pyrophosphokinase family protein | - |
| GP482_RS04185 (GP482_04185) | rcrQ | 850336..852108 (-) | 1773 | WP_158914031.1 | ABC transporter ATP-binding protein | Regulator |
| GP482_RS04190 (GP482_04190) | rcrP | 852098..853912 (-) | 1815 | WP_158914033.1 | ABC transporter ATP-binding protein | Regulator |
| GP482_RS04195 (GP482_04195) | rcrR | 853916..854356 (-) | 441 | WP_039696758.1 | MarR family transcriptional regulator | Regulator |
| GP482_RS04200 (GP482_04200) | - | 854500..854910 (-) | 411 | WP_157629110.1 | peptide deformylase | - |
| GP482_RS04205 (GP482_04205) | - | 854907..855416 (-) | 510 | WP_158914035.1 | GNAT family N-acetyltransferase | - |
| GP482_RS04210 (GP482_04210) | gdhA | 855573..856922 (-) | 1350 | WP_039696755.1 | NADP-specific glutamate dehydrogenase | - |
| GP482_RS04215 (GP482_04215) | - | 857159..857656 (+) | 498 | WP_039696754.1 | DUF308 domain-containing protein | - |
| GP482_RS04220 (GP482_04220) | - | 857732..859083 (+) | 1352 | WP_158914037.1 | IS3 family transposase | - |
| GP482_RS04225 (GP482_04225) | queF | 859132..859623 (-) | 492 | WP_158914039.1 | preQ(1) synthase | - |
| GP482_RS04230 (GP482_04230) | queE | 859772..860485 (-) | 714 | WP_158914042.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| GP482_RS04235 (GP482_04235) | queD | 860478..860924 (-) | 447 | WP_158914044.1 | 6-carboxytetrahydropterin synthase QueD | - |
| GP482_RS04240 (GP482_04240) | queC | 860924..861574 (-) | 651 | WP_158914046.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| GP482_RS04245 (GP482_04245) | - | 861741..863510 (-) | 1770 | WP_158914048.1 | ABC transporter ATP-binding protein | - |
| GP482_RS04250 (GP482_04250) | - | 863513..865252 (-) | 1740 | WP_158914051.1 | ABC transporter ATP-binding protein | - |
| GP482_RS04255 (GP482_04255) | - | 865294..867162 (-) | 1869 | WP_158914053.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| GP482_RS04260 (GP482_04260) | - | 867159..868364 (-) | 1206 | WP_158914055.1 | CCA tRNA nucleotidyltransferase | - |
| GP482_RS04265 (GP482_04265) | dapB | 868361..869128 (-) | 768 | WP_074626670.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 17106.65 Da Isoelectric Point: 8.4635
>NTDB_id=409114 GP482_RS04195 WP_039696758.1 853916..854356(-) (rcrR) [Streptococcus ruminicola strain CNU_77-61]
MRDKDPFSQFRYFINLMENRVHELGEQHGVENLAGPQGFAVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGF
IEVVPSEVDKRYKRVVLTELGKAKSKDIDAFHVAIHKQIFDGISREELEISGRVFDRILKNLENKE
MRDKDPFSQFRYFINLMENRVHELGEQHGVENLAGPQGFAVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGF
IEVVPSEVDKRYKRVVLTELGKAKSKDIDAFHVAIHKQIFDGISREELEISGRVFDRILKNLENKE
Nucleotide
Download Length: 441 bp
>NTDB_id=409114 GP482_RS04195 WP_039696758.1 853916..854356(-) (rcrR) [Streptococcus ruminicola strain CNU_77-61]
ATGCGAGACAAAGATCCGTTTTCACAATTTAGATACTTTATTAATTTGATGGAGAATCGGGTACATGAACTCGGTGAGCA
GCACGGTGTTGAAAATCTCGCTGGTCCGCAGGGTTTTGCAGTGCTTTATTTACGTGAAAATGAAGACAAGGAAGTTTTTA
TCAAAGATATTGAGCGTAAACTGAAGATTTCAAAATCTGTGACCAGTAATTTGATTAAGCGAATGGAGAAGAATGGCTTT
ATTGAGGTGGTTCCGTCAGAGGTTGATAAGCGTTATAAGCGTGTCGTCTTGACTGAGCTGGGCAAAGCAAAATCCAAAGA
CATCGATGCTTTTCATGTTGCCATTCATAAGCAAATTTTTGATGGTATTAGCCGTGAAGAACTAGAAATTTCTGGTCGTG
TCTTTGATCGCATTTTGAAAAACTTAGAAAACAAGGAGTAA
ATGCGAGACAAAGATCCGTTTTCACAATTTAGATACTTTATTAATTTGATGGAGAATCGGGTACATGAACTCGGTGAGCA
GCACGGTGTTGAAAATCTCGCTGGTCCGCAGGGTTTTGCAGTGCTTTATTTACGTGAAAATGAAGACAAGGAAGTTTTTA
TCAAAGATATTGAGCGTAAACTGAAGATTTCAAAATCTGTGACCAGTAATTTGATTAAGCGAATGGAGAAGAATGGCTTT
ATTGAGGTGGTTCCGTCAGAGGTTGATAAGCGTTATAAGCGTGTCGTCTTGACTGAGCTGGGCAAAGCAAAATCCAAAGA
CATCGATGCTTTTCATGTTGCCATTCATAAGCAAATTTTTGATGGTATTAGCCGTGAAGAACTAGAAATTTCTGGTCGTG
TCTTTGATCGCATTTTGAAAAACTTAGAAAACAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rcrR | Streptococcus mutans UA159 |
53.846 |
97.945 |
0.527 |