Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GP482_RS04190 Genome accession   NZ_CP046875
Coordinates   852098..853912 (-) Length   604 a.a.
NCBI ID   WP_158914033.1    Uniprot ID   A0AAE6R505
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 839851..869128 852098..853912 within 0


Gene organization within MGE regions


Location: 839851..869128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS04150 (GP482_04150) - 839851..840696 (+) 846 WP_158914019.1 aldo/keto reductase -
  GP482_RS04155 (GP482_04155) - 840746..843694 (-) 2949 WP_158914021.1 type III restriction-modification system endonuclease -
  GP482_RS04160 (GP482_04160) - 843708..845828 (-) 2121 WP_158914023.1 site-specific DNA-methyltransferase -
  GP482_RS04165 (GP482_04165) - 846281..847632 (+) 1352 WP_158913146.1 IS3 family transposase -
  GP482_RS04170 (GP482_04170) - 847682..848908 (-) 1227 WP_158914025.1 HAMP domain-containing sensor histidine kinase -
  GP482_RS04175 (GP482_04175) - 848917..849597 (-) 681 WP_158914027.1 response regulator transcription factor -
  GP482_RS04180 (GP482_04180) - 849600..850235 (-) 636 WP_158914029.1 GTP pyrophosphokinase family protein -
  GP482_RS04185 (GP482_04185) rcrQ 850336..852108 (-) 1773 WP_158914031.1 ABC transporter ATP-binding protein Regulator
  GP482_RS04190 (GP482_04190) rcrP 852098..853912 (-) 1815 WP_158914033.1 ABC transporter ATP-binding protein Regulator
  GP482_RS04195 (GP482_04195) rcrR 853916..854356 (-) 441 WP_039696758.1 MarR family transcriptional regulator Regulator
  GP482_RS04200 (GP482_04200) - 854500..854910 (-) 411 WP_157629110.1 peptide deformylase -
  GP482_RS04205 (GP482_04205) - 854907..855416 (-) 510 WP_158914035.1 GNAT family N-acetyltransferase -
  GP482_RS04210 (GP482_04210) gdhA 855573..856922 (-) 1350 WP_039696755.1 NADP-specific glutamate dehydrogenase -
  GP482_RS04215 (GP482_04215) - 857159..857656 (+) 498 WP_039696754.1 DUF308 domain-containing protein -
  GP482_RS04220 (GP482_04220) - 857732..859083 (+) 1352 WP_158914037.1 IS3 family transposase -
  GP482_RS04225 (GP482_04225) queF 859132..859623 (-) 492 WP_158914039.1 preQ(1) synthase -
  GP482_RS04230 (GP482_04230) queE 859772..860485 (-) 714 WP_158914042.1 7-carboxy-7-deazaguanine synthase QueE -
  GP482_RS04235 (GP482_04235) queD 860478..860924 (-) 447 WP_158914044.1 6-carboxytetrahydropterin synthase QueD -
  GP482_RS04240 (GP482_04240) queC 860924..861574 (-) 651 WP_158914046.1 7-cyano-7-deazaguanine synthase QueC -
  GP482_RS04245 (GP482_04245) - 861741..863510 (-) 1770 WP_158914048.1 ABC transporter ATP-binding protein -
  GP482_RS04250 (GP482_04250) - 863513..865252 (-) 1740 WP_158914051.1 ABC transporter ATP-binding protein -
  GP482_RS04255 (GP482_04255) - 865294..867162 (-) 1869 WP_158914053.1 ABC-F family ATP-binding cassette domain-containing protein -
  GP482_RS04260 (GP482_04260) - 867159..868364 (-) 1206 WP_158914055.1 CCA tRNA nucleotidyltransferase -
  GP482_RS04265 (GP482_04265) dapB 868361..869128 (-) 768 WP_074626670.1 4-hydroxy-tetrahydrodipicolinate reductase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67081.06 Da        Isoelectric Point: 5.7778

>NTDB_id=409113 GP482_RS04190 WP_158914033.1 852098..853912(-) (rcrP) [Streptococcus ruminicola strain CNU_77-61]
MLKIFKRLTAKEIIMMIIAVLFVCLNVFLDLKIPDYMSDITSLLSTQGTKAKDIFAWNLDAPGMRMVLLSLGSFAASVVV
GFLAARIAASFSTRLRDDIFHSVLDFSDAEIKKFSIPSLLTRTTNDITQIQLVFTMGLQVITKGPIMAIWAITKIADKNH
EWLMVLVVAVAVMILMLIFLLMMVMPKQRMIQKLTDKLNSITRESLTGIRVVRAYNAESYQDGKFAKANDNVTNFNLFIN
RSMALMSPVMTSISSGMTLAIYWIGAFLIEDIAIPKDPTKIAGAMQDKVNIFSDMVVYSSYAMQVVIGFMMMIIVFFILP
RAVVAAGRINEVLDTKPSVLYPEESKVQPAEKGSVEFNDVSFRYSDHSEAVLEHISFKAKAGDTVAFIGSTGSGKSTLVN
LIPRFYDASEGTIKVDGVDVRDYDHDTLHKIVGYIPQKAVLFSGDIASNMDMGDSNSSPLDDDKMWEALDLAQGKDFVES
KEGQLKAQVSQGGQNFSGGQKQRLAIARALARKPEIIIFDDSFSALDYKTDRILRSQLKERTADMTKLIVAQRISTIMDA
DQILVLDEGKVVGQGTHEELLANNEVYREIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=409113 GP482_RS04190 WP_158914033.1 852098..853912(-) (rcrP) [Streptococcus ruminicola strain CNU_77-61]
ATGTTAAAAATTTTTAAACGTTTAACGGCAAAAGAAATCATCATGATGATTATCGCCGTCTTATTTGTGTGTTTGAATGT
TTTCTTGGATTTGAAAATTCCAGATTACATGTCTGACATCACATCCTTGCTCTCAACTCAAGGAACAAAAGCAAAAGATA
TTTTTGCTTGGAATCTAGATGCCCCAGGTATGCGTATGGTCTTGCTTTCTTTAGGAAGTTTTGCAGCCTCTGTAGTTGTC
GGATTCTTAGCCGCACGTATTGCAGCAAGTTTCAGTACGCGTTTGCGTGATGATATTTTCCATAGTGTTTTGGACTTTTC
AGATGCGGAAATCAAGAAATTTTCAATTCCAAGTCTTTTGACACGTACAACAAATGATATTACTCAAATTCAGTTGGTCT
TTACCATGGGACTTCAAGTTATTACCAAAGGACCCATTATGGCAATCTGGGCAATCACAAAGATTGCTGATAAAAACCAT
GAGTGGTTGATGGTGCTGGTTGTAGCAGTGGCTGTCATGATTTTGATGTTGATTTTCTTGCTCATGATGGTAATGCCAAA
ACAACGCATGATTCAAAAATTGACTGATAAATTGAACAGTATCACGCGTGAATCATTGACTGGTATCCGTGTTGTTCGTG
CATACAATGCCGAAAGTTATCAAGATGGTAAATTTGCTAAAGCTAATGATAACGTGACAAACTTTAACCTCTTTATCAAC
CGTTCAATGGCTTTGATGTCGCCAGTTATGACAAGTATTTCAAGTGGGATGACTTTGGCAATTTATTGGATTGGTGCCTT
CTTGATTGAGGATATTGCCATTCCAAAAGACCCAACTAAGATTGCTGGTGCCATGCAAGATAAGGTAAATATTTTCTCAG
ATATGGTTGTTTATTCATCATATGCCATGCAAGTTGTTATTGGTTTTATGATGATGATTATTGTCTTCTTCATTCTTCCC
CGTGCAGTTGTTGCTGCTGGTCGTATTAATGAAGTCTTGGATACAAAACCATCAGTACTTTATCCAGAAGAAAGTAAAGT
TCAACCAGCCGAAAAAGGTTCTGTTGAATTCAACGATGTATCTTTCCGCTACAGCGATCATTCGGAAGCTGTTTTGGAAC
ATATTTCCTTCAAAGCTAAAGCAGGTGATACAGTTGCCTTTATCGGATCAACAGGTTCTGGTAAATCTACTCTAGTTAAT
TTGATTCCTCGTTTTTATGATGCAAGTGAAGGAACAATCAAAGTTGACGGTGTTGACGTTCGTGATTACGATCATGACAC
CCTTCACAAGATTGTTGGTTACATTCCGCAAAAAGCTGTGCTCTTTAGTGGAGACATTGCTTCAAATATGGACATGGGTG
ACAGCAATAGTTCACCGCTTGATGATGACAAGATGTGGGAAGCACTTGATTTGGCACAAGGTAAAGACTTCGTTGAAAGT
AAAGAAGGTCAATTGAAAGCCCAAGTCTCTCAAGGTGGTCAAAACTTCTCAGGTGGTCAAAAACAGCGCTTAGCGATTGC
GCGTGCACTTGCCCGTAAACCGGAAATTATCATCTTTGATGATTCATTCTCAGCGCTTGATTATAAGACTGACCGAATCC
TTCGATCTCAATTGAAAGAACGTACAGCTGACATGACTAAGTTGATTGTTGCCCAACGTATTTCAACAATCATGGATGCC
GATCAAATCTTAGTCTTGGATGAAGGAAAAGTAGTTGGTCAAGGTACTCACGAAGAATTGCTTGCAAATAATGAAGTTTA
TCGTGAAATTGCCTACTCACAATTATCTAAGGAGGAATTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-270)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.942

100

0.671

Multiple sequence alignment