Detailed information NTG0409110

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GP482_RS04015
• Genome accession: NZ_CP046875
• Coordinates: 814011..816119 (+)
• Length: 702 a.a.
• NCBI ID: WP_158913993.1
• Uniprot ID: A0AAE6R421
• Organism: Streptococcus ruminicola strain CNU_77-61
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 809011..821119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GP482_RS04005 (GP482_04005)	rplL	812505..812873 (-)	369	WP_009854351.1	50S ribosomal protein L7/L12	-
GP482_RS04010 (GP482_04010)	rplJ	812942..813445 (-)	504	WP_039696786.1	50S ribosomal protein L10	-
GP482_RS04015 (GP482_04015)	clpC	814011..816119 (+)	2109	WP_158913993.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
GP482_RS04020 (GP482_04020)	-	816323..816991 (+)	669	WP_074561098.1	YoaK family protein	-
GP482_RS04025 (GP482_04025)	mmuM	817023..817967 (-)	945	WP_158913995.1	homocysteine S-methyltransferase	-
GP482_RS04030 (GP482_04030)	-	817978..819354 (-)	1377	WP_158913997.1	amino acid permease	-
GP482_RS04035 (GP482_04035)	yihA	819491..820084 (-)	594	WP_074560304.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77344.23 Da
• Isoelectric Point: 4.7283

>NTDB_id=409110 GP482_RS04015 WP_158913993.1 814011..816119(+) (clpC) [Streptococcus ruminicola strain CNU_77-61]
MANNQFYGRDPFGNMDDIFNQLMGNMGGYNSENKRYLINGREVTPEEFAQYRQTGKLPGNADYQEGTPTSAPKEDGILAK
LGTNLTERARNNELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNMIKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDVKSLEKEIAEQKEKQEAAAAKEDYEAALNAKVRIEELQKQIDNHTEDKKVTATVNDVAESVERLTGVPVSNM
GASDIERLKELASRLKGKVIGQDEAVDAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQEDKDMKIMDRIAPYFRPEFLNRFNGIIEFSHLTKDDLNEIVDLMLAEVSKTIAKKGIDLV
VSDEAKQHLIEEGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADMVDGELVISEK

Nucleotide

• Length: 2109 bp

>NTDB_id=409110 GP482_RS04015 WP_158913993.1 814011..816119(+) (clpC) [Streptococcus ruminicola strain CNU_77-61]
ATGGCAAACAATCAATTTTACGGAAGAGATCCTTTTGGAAATATGGATGATATCTTCAACCAATTAATGGGTAACATGGG
AGGCTATAATTCAGAAAATAAACGCTACCTAATTAATGGTCGCGAAGTAACCCCTGAAGAATTTGCTCAATACCGACAAA
CTGGTAAACTCCCAGGAAATGCTGATTATCAAGAAGGTACTCCTACTTCTGCACCTAAAGAAGATGGTATCTTGGCTAAA
CTTGGAACAAACTTGACTGAACGTGCACGTAACAACGAACTTGATCCTGTTATCGGACGTAACAAGGAAATTCAAGAGAC
TGCTGAAATCTTGTCTCGTCGTACAAAAAACAATCCAGTTCTTGTTGGTGATGCCGGTGTTGGTAAAACAGCAGTTGTTG
AAGGATTAGCGCAAGCTATTGTTAACGGTGACGTGCCTGCTGCTATCAAGAACAAAGAAATCATCTCAATTGATATTTCA
GGCCTTGAAGCTGGTACACAATACCGTGGTGCTTTCGAAGAAAACATCCAAAACATGATTAAAGAAGTCAAAGACGCTGG
TAATATCATCCTCTTCTTTGATGAAATTCATCAAATTCTTGGAGCTGGTTCAACTGGTGGCGACTCTGGTTCTAAAGGTC
TAGCAGATATTCTTAAACCTGCTCTCTCCCGTGGTGAATTGACTGTTATTGGTGCGACTACACAAGACGAATACCGCAAT
ACCATTTTGAAAAATGCTGCGCTCGCTCGTCGTTTCAACGAAGTTAAAGTTAACGCTCCTTCTGCTCAAGACAGCTTTAA
CATCTTGATGGGTATTCGTGATTTGTACGAAAAACACCACAATGTTATCCTTCCAGATAACGTTTTGAAAGCTGCCGTTG
ACTTTTCAATCCAATACATTCCACAACGTAGTTTACCAGATAAAGCAATTGACTTAATCGATATGACTGCTGCTCACCTA
GCTGCACAACATCCTGTAACTGATGTTAAATCTTTGGAAAAAGAAATTGCAGAACAAAAAGAAAAACAAGAAGCCGCTGC
CGCTAAAGAGGATTACGAAGCAGCTCTTAACGCCAAAGTGCGTATCGAAGAATTGCAAAAACAAATCGATAATCACACTG
AAGACAAGAAAGTTACTGCTACCGTTAATGACGTTGCTGAATCCGTTGAACGTCTAACTGGTGTGCCTGTTTCAAACATG
GGCGCAAGCGACATCGAACGTTTGAAAGAATTGGCTAGTCGTTTGAAAGGTAAAGTCATTGGTCAAGACGAAGCTGTAGA
TGCTGTTGCTCGTGCTATTCGCCGTAACCGTGCTGGTTTTGATGAAGGAAACCGACCAATTGGTAGCTTCCTCTTCGTAG
GTCCTACTGGTGTTGGTAAGACAGAACTTGCTAAACAATTGGCTCTTGATATGTTTGGTTCAAAAGATGCAATCATCCGT
CTAGACATGTCTGAGTACTCTGATCGCACAGCCGTTTCTAAGTTGATTGGTACAACTGCTGGTTATGTTGGTTACGATGA
CAACAATAACACACTTACTGAACGTGTTCGTCGTAATCCTTACTCAATCGTTCTTCTTGATGAAATTGAAAAAGCCGACC
CACAAGTTATTACACTTCTTCTTCAAGTTTTGGACGATGGTCGTTTGACTGATGGTCAAGGTAATACAATTAACTTCAAA
AACACTGTTATCATTGCTACATCTAACGCTGGCTTTGGTAATGAAGCTTTGACTGGTCAAGAAGACAAAGACATGAAGAT
TATGGATCGTATCGCTCCATACTTCCGTCCGGAATTCCTTAACCGTTTCAACGGTATCATCGAATTCTCTCACTTGACTA
AGGATGACTTGAACGAAATCGTTGACTTGATGCTAGCTGAAGTTAGCAAGACTATCGCTAAGAAAGGTATTGATCTAGTC
GTTAGCGATGAAGCTAAACAACACCTTATCGAAGAAGGCTACGATGAAGCTATGGGTGTTCGACCACTCCGCCGTGTTAT
CGAACAAGAAATTCGCGATAAAATCACTGATTTCTACCTTGATCACACAGATGTTAAACACCTTAAAGCTGATATGGTTG
ACGGAGAACTTGTTATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-683)

• AAA lid domain (AAA_lid_9) (262-355)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.212	99.573	0.48
clpE	Streptococcus mutans UA159	50.313	90.883	0.457
clpE	Streptococcus pneumoniae TIGR4	49.137	90.741	0.446
clpE	Streptococcus pneumoniae Rx1	49.137	90.741	0.446
clpE	Streptococcus pneumoniae D39	49.137	90.741	0.446
clpE	Streptococcus pneumoniae R6	49.137	90.741	0.446
clpC	Bacillus subtilis subsp. subtilis str. 168	45.224	95.442	0.432
clpC	Streptococcus pneumoniae Rx1	43.354	90.028	0.39
clpC	Streptococcus pneumoniae D39	43.354	90.028	0.39
clpC	Streptococcus pneumoniae TIGR4	43.402	89.601	0.389
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.296	88.177	0.382
clpC	Streptococcus thermophilus LMG 18311	43.226	88.319	0.382
clpC	Streptococcus mutans UA159	42.926	88.604	0.38
clpC	Streptococcus thermophilus LMD-9	43.112	87.892	0.379