Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GP482_RS01665 Genome accession   NZ_CP046875
Coordinates   322528..324330 (+) Length   600 a.a.
NCBI ID   WP_158913360.1    Uniprot ID   A0AAE6R4T0
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 317528..329330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS01640 (GP482_01640) queA 318192..319220 (-) 1029 WP_021141922.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GP482_RS01645 (GP482_01645) - 319379..319885 (+) 507 WP_039697213.1 VIT1/CCC1 transporter family protein -
  GP482_RS01650 (GP482_01650) nagB 320018..320725 (+) 708 WP_039697212.1 glucosamine-6-phosphate deaminase -
  GP482_RS01655 (GP482_01655) - 320799..321515 (+) 717 WP_039697211.1 pseudouridine synthase -
  GP482_RS01660 (GP482_01660) coiA 321566..322528 (+) 963 WP_158913358.1 competence protein CoiA family protein Machinery gene
  GP482_RS01665 (GP482_01665) pepF 322528..324330 (+) 1803 WP_158913360.1 oligoendopeptidase F Regulator
  GP482_RS01670 (GP482_01670) - 324400..324915 (+) 516 WP_158913362.1 GNAT family N-acetyltransferase -
  GP482_RS01675 (GP482_01675) - 324917..325528 (+) 612 WP_158913364.1 HAD-IA family hydrolase -
  GP482_RS01680 (GP482_01680) - 325576..326277 (+) 702 WP_074601492.1 O-methyltransferase -
  GP482_RS01685 (GP482_01685) - 326347..327417 (+) 1071 WP_158913366.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69225.29 Da        Isoelectric Point: 4.6779

>NTDB_id=409104 GP482_RS01665 WP_158913360.1 322528..324330(+) (pepF) [Streptococcus ruminicola strain CNU_77-61]
MSDNRSHIDEKYKWDLSTVFATDETWEAELAKLDADLEDAKKYKGHLTESSKDLLAITEHYLDLSRRLEKVYVYASMKND
QDTTVAKYQEYQAKATALYAKYSEVFAFYEPELMQLSAEEFAAFVAETPALSAYAHFFEQLFKRQAHVLSQKEEELLAGA
HEIFGAAGETFEILDNADIVFPVVLDDEGNEVQLTHGNFISLLESKNRDVRKAAYEAMYATYEQFQHTYAKTLQTNVKVH
NYDARVHHFKSAREAALSANFIPEAVYDTLIDRVNAHLPLLHRYVELRKKVLKLDDLKMYDIHTPLSEMDMSFTYEEALK
KAEEVLAVFGKDYFERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHFLDGFKGTIFRQAQFAEFEDMIHKADQAGEVLTSEY
LNNLYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQVDIDRYLDYLKAGNSDYPL
NVIEKAGVDMTSSDYLDAAFKIFEDRLNELEALVEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=409104 GP482_RS01665 WP_158913360.1 322528..324330(+) (pepF) [Streptococcus ruminicola strain CNU_77-61]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACAAATGGGATTTGAGTACTGTCTTTGCGACAGATGAAACATGGGA
GGCTGAATTAGCTAAGTTAGATGCTGATTTAGAAGATGCTAAAAAATATAAAGGTCACTTGACAGAATCAAGCAAGGATT
TGCTAGCTATTACGGAGCATTATCTTGATTTGTCACGACGTTTGGAAAAAGTCTACGTTTATGCGTCAATGAAAAATGAC
CAAGATACAACAGTGGCCAAATACCAAGAATATCAAGCAAAAGCCACAGCACTTTATGCTAAATACAGTGAAGTCTTTGC
TTTTTACGAACCAGAATTGATGCAATTATCGGCTGAAGAATTTGCTGCTTTTGTAGCTGAAACGCCAGCACTGTCAGCTT
ATGCGCATTTCTTTGAACAACTTTTCAAACGCCAAGCACACGTCTTGTCACAAAAAGAAGAAGAGCTCTTAGCTGGTGCC
CATGAAATCTTTGGTGCTGCTGGTGAAACTTTTGAAATTCTAGATAATGCCGATATTGTTTTCCCAGTGGTTTTAGATGA
TGAAGGCAATGAAGTGCAACTAACACATGGTAATTTCATCAGTCTTTTGGAATCAAAAAATCGTGATGTTCGAAAAGCTG
CTTACGAGGCAATGTATGCGACTTATGAACAATTCCAACACACTTACGCTAAAACATTGCAGACAAATGTTAAGGTTCAT
AACTACGATGCGCGTGTTCACCACTTCAAGTCAGCACGTGAGGCAGCACTTTCTGCTAACTTCATTCCAGAAGCAGTTTA
TGATACATTGATTGACCGCGTGAATGCCCACTTGCCATTGCTTCATCGTTATGTGGAACTTCGTAAAAAAGTTCTTAAAT
TAGATGATTTGAAAATGTATGATATTCATACACCGTTGTCTGAAATGGATATGAGTTTCACTTATGAAGAAGCTTTGAAA
AAAGCAGAAGAAGTTTTGGCTGTCTTTGGTAAAGATTATTTTGAGCGTGTTCATCGTGCTTTCACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGAAAACGCTCAGGAGCTTATTCTGGTGGGTCTTACGATACCAACGCCTTTATGCTTTTGAACT
GGCAAGATACGCTTGATAATCTGTTTACTTTGGTACACGAAACTGGGCACAGCCTTCATTCAACATTTACTCGTGAAAAT
CAACCGTATGTCTACGGTGATTACAGCATTTTCTTAGCTGAAATTGCTTCAACAACCAATGAAAATATTTTAACGGAAAC
GCTTTTGAAAGAAGTTGACGATGATAAAGCTCGCTTTGCGATTTTGAATCATTTCTTGGATGGCTTCAAAGGAACAATCT
TCCGTCAAGCACAATTTGCTGAGTTTGAAGATATGATTCATAAAGCAGACCAAGCTGGTGAAGTATTGACAAGCGAATAC
CTTAACAATCTTTATGCAGACCTAAATGAAAAATATTATGGTCTTAGCAAGGAAGACAATCCAGAAATTCAATACGAATG
GGCACGTATTCCGCATTTCTACTACAATTATTATGTCTATCAATACGCAACAGGTTTTGCAGCAGCAAGCTACCTAGCTG
ATAAAGTGGTTCACGGTACACAAGTTGATATCGACCGTTACCTTGATTACCTCAAGGCTGGTAATTCTGATTACCCACTT
AATGTGATTGAAAAAGCTGGAGTTGATATGACAAGCAGTGATTATCTGGATGCTGCCTTCAAGATTTTTGAAGACCGTCT
AAATGAACTAGAAGCCTTGGTTGAAAAAGGGGCACACCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.667

100

0.717

Multiple sequence alignment