Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GO174_RS21015 Genome accession   NZ_CP046858
Coordinates   1252881..1254062 (-) Length   393 a.a.
NCBI ID   WP_158126222.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247881..1259062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS21010 cqsS 1250797..1252845 (+) 2049 WP_020432686.1 hybrid sensor histidine kinase/response regulator Regulator
  GO174_RS21015 cqsA 1252881..1254062 (-) 1182 WP_158126222.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GO174_RS21020 - 1254281..1255237 (-) 957 WP_038157684.1 TDT family transporter -
  GO174_RS21025 clcA 1255402..1256799 (-) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  GO174_RS21030 - 1257260..1258249 (+) 990 WP_158126223.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43604.53 Da        Isoelectric Point: 6.7319

>NTDB_id=409024 GO174_RS21015 WP_158126222.1 1252881..1254062(-) (cqsA) [Vibrio fluvialis strain 2015AW-0233]
MKTDAKNNRLPEFIQDRLNFFVRDLIQSNNNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIRARLKKAIDDTHDSVFMS
AIFLQDDESKPSLEHQLAEFAHFDSCLLSQSGWNANTALLQTICAPGSNVYIDFFAHMSMWEGARYANATIHPFMHNNCD
HLLKQIKRHGPGIIVVDSIYSTIGTIAPLAELVAIAKETGSAILVDESHSLGTHGKNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNVNQCVPFVGYPAIFSSTILPYEIAALEATLDVIKSADERRERLFHNTHILFTGLNRLGINIRSQSQ
IIALETGDERNTEKVRDYLEDNGIFGAVFCRPATSKTKNIIRLSLTSSVTAEQIDRILSVCQNAVNRSDLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=409024 GO174_RS21015 WP_158126222.1 1252881..1254062(-) (cqsA) [Vibrio fluvialis strain 2015AW-0233]
ATGAAAACTGATGCCAAAAATAATCGGTTACCTGAGTTTATTCAGGACCGTTTAAATTTCTTCGTTCGCGATTTAATTCA
AAGTAATAACAACGGTAAACATCTGGTATTAGGTAAACGCCCTTCACAAGGCGATATTGTTTTACAAAGCAACGATTACC
TCAGTCTGGCTAACCATCCGTTGATTCGTGCGCGTTTGAAAAAGGCCATCGACGATACTCATGACAGCGTCTTTATGTCG
GCGATTTTCCTGCAGGATGATGAGTCGAAACCAAGCCTGGAACATCAACTGGCAGAGTTCGCTCACTTTGACTCCTGCCT
GCTGTCGCAATCGGGCTGGAATGCCAATACCGCTTTGCTGCAAACCATCTGCGCGCCAGGAAGTAATGTCTATATCGACT
TCTTTGCTCATATGTCTATGTGGGAAGGCGCTCGTTACGCGAATGCCACTATTCATCCGTTTATGCACAACAACTGCGAC
CATTTACTTAAGCAGATAAAACGCCATGGCCCGGGAATTATCGTCGTCGATTCAATCTACAGCACCATTGGCACCATTGC
GCCGTTAGCTGAATTAGTCGCGATCGCTAAAGAGACCGGCAGCGCTATTCTCGTTGATGAATCGCACTCTCTTGGCACCC
ACGGTAAGAATGGCGCAGGTTTACTGGCAGAGTTAGGTTTATCTGATCAAGTGGATTTTATGACTGCGAGCCTGGCGAAA
ACGTTTGCTTATCGGGCGGGAGTTATCTGGGCAAATAATAACGTCAATCAGTGCGTTCCATTCGTGGGTTATCCGGCGAT
ATTCAGCTCAACAATTTTGCCTTATGAAATTGCAGCTCTCGAAGCAACGCTGGATGTGATTAAATCCGCCGATGAACGAC
GTGAGCGTTTATTTCATAATACACATATATTGTTTACGGGATTAAATAGACTTGGTATTAATATTCGCAGTCAATCGCAA
ATAATAGCGTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCCGCGATTATTTAGAAGATAACGGTATTTTTGGCGC
AGTATTTTGCCGACCAGCCACATCGAAAACTAAGAATATTATTCGCTTGTCATTAACCAGTTCTGTCACTGCTGAACAGA
TCGACCGTATTTTATCGGTCTGCCAAAATGCGGTAAACAGAAGCGACCTTTACTTTAAATAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

70.13

97.964

0.687

Multiple sequence alignment