Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GO174_RS21010 Genome accession   NZ_CP046858
Coordinates   1250797..1252845 (+) Length   682 a.a.
NCBI ID   WP_020432686.1    Uniprot ID   A0AAX2LY86
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245797..1257845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS21000 - 1246471..1247613 (+) 1143 WP_158126220.1 exonuclease SbcCD subunit D -
  GO174_RS21005 - 1247617..1250658 (+) 3042 WP_158126221.1 SMC family ATPase -
  GO174_RS21010 cqsS 1250797..1252845 (+) 2049 WP_020432686.1 hybrid sensor histidine kinase/response regulator Regulator
  GO174_RS21015 cqsA 1252881..1254062 (-) 1182 WP_158126222.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GO174_RS21020 - 1254281..1255237 (-) 957 WP_038157684.1 TDT family transporter -
  GO174_RS21025 clcA 1255402..1256799 (-) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 79191.80 Da        Isoelectric Point: 5.3014

>NTDB_id=409023 GO174_RS21010 WP_020432686.1 1250797..1252845(+) (cqsS) [Vibrio fluvialis strain 2015AW-0233]
MEVVKKIYQYAEPNLTLVGWMGFIGFPLYYYIWQYVFPQPYESLLLRSFCSCLFGGIAFRNSVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQAAISILAAYGAVYWIQHYEPQQYILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQNNISRGAHIDEQDLTLLHEILDNADDV
IHTGNETIDLLLTSIDENRVSRSTFRKQSAREVVDYALHSFSYKRAIDRQSVTLVVEDDFDYFGSDTLLKFALYNLLKNA
FYYQNSEQFHIDVTLKTQGNQNLIVVKDNGVGIAPDRIDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIACASVLGE
WTEFTLSFPLYESQEVSHIKLDLMKNKSVLYIGTQGLMSRHLSETSFYQGFRLHLVTLQEALVREEYEFEYDAIVLDLEQ
IEDHWQSVVELESKLHFTEAQIVYLFDKQREYPINIERHLRVTPLDIRQMLRDTDKELDKLFFDVAELVQDRNVIPQKKQ
TYERRILVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVESSDFDLILMDIEMPFIDGIEATRVIRDSDKPYRHIP
IVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=409023 GO174_RS21010 WP_020432686.1 1250797..1252845(+) (cqsS) [Vibrio fluvialis strain 2015AW-0233]
ATGGAAGTAGTAAAGAAAATTTACCAGTATGCTGAGCCTAACCTCACCCTCGTGGGGTGGATGGGCTTTATTGGTTTTCC
ACTCTACTACTATATTTGGCAGTACGTCTTTCCACAGCCATACGAATCGTTGCTGCTACGCAGCTTTTGTTCGTGTTTGT
TCGGTGGCATCGCGTTTCGTAATTCCGTGCCCAAATTATGGCAGCGGTATCTGCCGTATTATTACCTGTTTATGATAGGT
TTCTGCCTGCCATTCTTCTTCGCTTATATGATGCTGATGAATGACTGGTCGACCGTATGGGCGATGTCTTTTATGGCATC
AATATTCCTGCACATTCTGCTGGTGCATGAGACCAAAGTTATGCTGCTTCAGGCCGCGATATCCATATTGGCAGCCTACG
GTGCGGTGTATTGGATTCAGCACTATGAGCCGCAACAGTATATTTTGTGGCCGTACGTACCGATTTTCCTATTCACCTAT
GTGTTTGGTAACCTGTTTTATTTCAGGAACCAGAGCTCTCACGAATCAAAAGTCTCCATTGCCAAATCGTTCGGAGCGGG
CATCGCGCATGAGATGCGTAACCCGCTGAGTGCATTGAAGTCATCGGTTGATGTATTGCGCTCCATTCTTCCGGCTCAAA
ACAACATCTCACGTGGCGCGCATATTGATGAGCAAGATCTGACGTTGCTGCATGAGATTCTCGATAATGCCGACGACGTT
ATTCACACCGGTAATGAAACCATCGATCTGTTACTGACCTCGATCGATGAGAACCGAGTATCGCGTTCCACGTTCAGGAA
GCAGTCGGCGCGCGAAGTCGTTGACTATGCGTTGCATTCGTTCTCCTACAAGCGTGCGATTGATCGTCAATCGGTGACTT
TAGTGGTCGAGGATGACTTCGACTATTTCGGCAGTGATACGCTGTTGAAATTTGCACTGTATAACTTGCTGAAAAACGCC
TTCTATTATCAGAACAGCGAGCAGTTCCATATTGATGTGACCCTGAAAACCCAGGGCAATCAGAACCTCATCGTGGTCAA
AGATAATGGCGTAGGCATTGCGCCGGATCGCATCGACGATATCTTTAAAGATTTTTATACCTTCGGTAAAAATGGCAGCT
ACGGACTTGGATTACCCTTCTGCCGCAAAGTGATGAAATCTTTTGGCGGTAACATTGCGTGTGCGTCGGTGCTGGGGGAA
TGGACCGAATTTACTCTGAGTTTCCCTTTGTATGAGTCGCAGGAAGTCTCACACATCAAACTGGATCTGATGAAAAATAA
ATCCGTTCTGTATATTGGAACACAAGGATTAATGAGTCGCCATTTAAGTGAGACATCGTTTTATCAGGGATTCCGTCTGC
ACCTTGTGACGTTGCAGGAAGCTCTGGTACGCGAAGAGTATGAATTCGAATATGATGCCATTGTGCTGGATCTCGAACAG
ATTGAAGATCACTGGCAATCGGTGGTCGAACTGGAAAGTAAACTGCACTTTACTGAAGCGCAAATTGTCTACCTGTTTGA
TAAACAGCGGGAATATCCGATCAATATTGAGCGCCATTTACGCGTAACGCCGCTGGACATTCGTCAGATGTTACGGGATA
CGGACAAAGAACTGGACAAGCTGTTCTTTGATGTCGCGGAACTGGTTCAGGATCGCAACGTGATTCCGCAGAAGAAACAG
ACGTATGAACGCCGTATTCTGGTGGTGGATGATAACCAGTCGTTGCGTACCTTCACCGCGTTGATGCTAGAAAAGCAGGG
TTATGAAGTGGTACAGGCAAATGATGGTCAACAGGCGTTGGATGCGGTCGAGAGCAGCGATTTCGATTTAATCCTGATGG
ATATCGAAATGCCGTTTATCGATGGCATAGAAGCAACACGGGTTATTCGTGATTCGGACAAGCCGTACCGCCACATTCCT
ATTGTCGGGCATACGGGCGATAACAGCCCGATGACGATCGAAAAAATTCATAAATCGGGCATGAACGACTACATCGTTAA
ACCCGCTGATAAAGACAAACTACTTGGTAAGCTGGCAAACTGGATCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.004

100

0.591

Multiple sequence alignment