Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GO175_RS02110 Genome accession   NZ_CP046855
Coordinates   338897..339514 (+) Length   205 a.a.
NCBI ID   WP_024374317.1    Uniprot ID   M1KD28
Organism   Vibrio fluvialis strain F8658     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 333897..344514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS02085 panC 334355..335236 (+) 882 WP_020331996.1 pantoate--beta-alanine ligase -
  GO175_RS02090 - 335295..336065 (-) 771 WP_020331995.1 ABC transporter permease -
  GO175_RS02095 - 336070..336987 (-) 918 WP_154184019.1 ABC transporter ATP-binding protein -
  GO175_RS02100 can 337331..337999 (+) 669 WP_020331992.1 carbonate dehydratase -
  GO175_RS02105 hpt 338049..338576 (-) 528 WP_020331991.1 hypoxanthine phosphoribosyltransferase -
  GO175_RS02110 opaR 338897..339514 (+) 618 WP_024374317.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GO175_RS02115 lpdA 339636..341063 (-) 1428 WP_020331989.1 dihydrolipoyl dehydrogenase -
  GO175_RS02120 aceF 341322..343211 (-) 1890 WP_158147895.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23890.30 Da        Isoelectric Point: 6.2346

>NTDB_id=408929 GO175_RS02110 WP_024374317.1 338897..339514(+) (opaR) [Vibrio fluvialis strain F8658]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVQANRVRDEGYMRKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=408929 GO175_RS02110 WP_024374317.1 338897..339514(+) (opaR) [Vibrio fluvialis strain F8658]
ATGGACGCATCTATAGAGAAACGCCCTAGAACGCGGCTATCTCCTCAAAAACGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATCGCAGAAATTGCTCAAGTTTCTGTCGCCACCG
TGTTCAACTACTTCCCTACTCGTGAAGACTTAGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTCCTC
ACCGACAACATCGATCTCGATATCCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTCTCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATCTGGCGACGCTGTTCCACGGTGTCTGCTACTCACTGTTTGTGCAAGCTAACCGCGTTCGCGATGAAGGCTACAT
GCGTAAACTGGTGAAAAGCTACCTGGATATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M1KD28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.188

98.537

0.8
  hapR Vibrio cholerae C6706

78.713

98.537

0.776
  hapR Vibrio cholerae strain A1552

78.713

98.537

0.776

Multiple sequence alignment