Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY11_RS15245 Genome accession   NZ_CP046851
Coordinates   2573430..2574110 (-) Length   226 a.a.
NCBI ID   WP_223173093.1    Uniprot ID   -
Organism   Grimontia hollisae strain F9489     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2568430..2579110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY11_RS15220 - 2568744..2569277 (+) 534 WP_229333261.1 hypothetical protein -
  GPY11_RS15225 - 2569287..2570345 (+) 1059 WP_005501650.1 COX15/CtaA family protein -
  GPY11_RS15230 cyoE 2570338..2571255 (+) 918 WP_114996280.1 heme o synthase -
  GPY11_RS15235 dinF 2571335..2572675 (+) 1341 WP_158175080.1 MATE family efflux transporter DinF -
  GPY11_RS15240 nfuA 2572738..2573322 (-) 585 WP_005501641.1 Fe-S biogenesis protein NfuA -
  GPY11_RS15245 comF 2573430..2574110 (-) 681 WP_223173093.1 ComF family protein Machinery gene
  GPY11_RS15250 bioH 2574150..2574932 (+) 783 WP_114996278.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY11_RS15255 - 2575031..2575360 (+) 330 WP_005501637.1 hypothetical protein -
  GPY11_RS15260 - 2575436..2575933 (+) 498 WP_040528056.1 hypothetical protein -
  GPY11_RS15265 - 2576000..2578327 (-) 2328 WP_158175081.1 Tex family protein -
  GPY11_RS15270 greB 2578366..2578851 (-) 486 WP_005501634.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25573.01 Da        Isoelectric Point: 9.5522

>NTDB_id=408912 GPY11_RS15245 WP_223173093.1 2573430..2574110(-) (comF) [Grimontia hollisae strain F9489]
MLNIILRALPLRCQLCQHPLGQSRHPWCETCHASLPRHPRCLQCGLPTPYVIESCGHCLKKPPLWDGLICVGTYTFPYDK
LLHRFKYQGHYWLAPALATLLATEIEEPAPLLLPVPMHWRRRISRGFNHSGVLARELAKVLETQYAPNVLKRTRATRQQQ
GLNRQSRLSNLKSAFSVNGKLPPHVALVDDVVTTGATIAQICSLLRRHGVERIDVYCLCRTPPDAI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=408912 GPY11_RS15245 WP_223173093.1 2573430..2574110(-) (comF) [Grimontia hollisae strain F9489]
ATGTTGAACATTATCTTACGTGCCTTGCCCCTGCGCTGTCAGCTTTGCCAGCATCCTCTTGGGCAATCCAGGCACCCCTG
GTGCGAAACGTGTCACGCCAGCTTGCCTCGCCACCCCCGCTGCCTTCAGTGTGGGCTGCCTACCCCCTACGTGATCGAAA
GTTGCGGGCACTGCCTGAAAAAGCCGCCGCTCTGGGACGGGTTAATCTGTGTCGGCACTTATACCTTCCCTTATGACAAA
CTGCTGCACCGGTTCAAATATCAGGGACACTACTGGCTGGCGCCTGCACTTGCCACCTTACTGGCAACAGAAATCGAGGA
GCCAGCCCCCTTACTGTTACCCGTCCCTATGCACTGGCGACGCCGTATCTCACGCGGATTCAACCACAGTGGCGTGTTAG
CCCGCGAGCTTGCAAAGGTTCTGGAGACCCAATATGCGCCCAACGTCTTAAAACGCACCCGTGCCACTCGCCAACAGCAG
GGATTAAACCGACAATCACGCCTTTCCAACCTGAAAAGTGCGTTTTCCGTCAACGGGAAACTACCACCACATGTAGCGCT
GGTCGATGATGTGGTGACCACAGGCGCGACCATCGCCCAGATTTGCAGCTTGCTCAGGCGACATGGTGTGGAACGCATTG
ATGTGTATTGTCTTTGCCGTACCCCGCCCGATGCCATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(132-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.113

94.248

0.491
  comF Vibrio campbellii strain DS40M4

43.668

100

0.442

Multiple sequence alignment