Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPX94_RS13850 Genome accession   NZ_CP046849
Coordinates   151987..153168 (-) Length   393 a.a.
NCBI ID   WP_154116182.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 146987..158168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS13845 cqsS 149874..151922 (+) 2049 WP_154116184.1 hybrid sensor histidine kinase/response regulator Regulator
  GPX94_RS13850 cqsA 151987..153168 (-) 1182 WP_154116182.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX94_RS13855 - 153495..156224 (-) 2730 WP_158147669.1 EAL domain-containing protein -
  GPX94_RS13860 - 156231..157247 (-) 1017 WP_078925025.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43851.23 Da        Isoelectric Point: 6.9848

>NTDB_id=408890 GPX94_RS13850 WP_154116182.1 151987..153168(-) (cqsA) [Vibrio cincinnatiensis strain F8054]
MKYDAKHTRLPEFIQTRLNLFIHDLIESNQNGKHLVLGKRPAENDIILQSNDYLSLSNHPVIKARLKKAIDESQDSLFMS
GIFLQDTHTKPPLEQQLADFAQFDTCLLSQSGWNANTALLQTICSPETPVYIDFFAHMSMWEGARYANAQLHPFMHNNCH
HLIKLIKRHGPGLIAVDSIYSTIGTMAPLTELVTIAKQHHCAILVDESHSLGVYGPHGSGLLCELGLSGQVDFMTVSLAK
TFAYRAGAIWANNNVDKCIPFVGYPAIFSSTILPYEVEALSATLAVIQESDDKRDQLARHAKTLRSALVKLGFTIRSQSQ
IIALETGDERNTEKVRDYLEEHGVFGAVFCRPATAKNKNIIRLSLNSSLTQEEIDKIIHVCGLAINNPNLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=408890 GPX94_RS13850 WP_154116182.1 151987..153168(-) (cqsA) [Vibrio cincinnatiensis strain F8054]
ATGAAATACGATGCCAAACATACGCGTCTACCTGAGTTTATTCAAACGCGTTTAAACCTATTTATCCATGATCTTATTGA
AAGCAATCAAAATGGAAAGCATCTTGTATTAGGGAAAAGACCCGCAGAGAATGACATTATTCTACAAAGTAATGACTACC
TCAGCTTATCTAATCATCCTGTGATTAAAGCTCGACTGAAAAAGGCCATTGATGAAAGTCAGGATAGCCTTTTTATGTCA
GGAATTTTTTTACAAGATACTCACACTAAACCACCACTAGAGCAGCAGTTAGCCGACTTTGCTCAATTTGATACTTGCTT
ATTATCGCAATCAGGTTGGAATGCCAATACCGCGTTATTACAAACCATCTGCTCTCCAGAAACGCCGGTCTATATTGATT
TTTTTGCTCATATGTCCATGTGGGAAGGAGCACGATACGCCAATGCACAATTGCACCCCTTCATGCATAATAATTGTCAT
CATTTAATTAAGTTAATAAAAAGACACGGCCCTGGGCTGATTGCTGTTGATTCTATCTATAGCACCATAGGGACTATGGC
ACCATTGACAGAGCTGGTCACGATTGCAAAACAGCACCATTGCGCAATTTTAGTGGATGAATCTCATTCATTAGGCGTTT
ATGGGCCACATGGTTCGGGGCTACTATGTGAGCTAGGGTTATCAGGGCAAGTCGACTTTATGACGGTCAGCCTAGCCAAA
ACCTTCGCTTATCGAGCGGGGGCAATATGGGCAAACAATAATGTGGATAAATGTATTCCCTTTGTTGGTTACCCAGCTAT
CTTTAGCTCGACCATTCTTCCCTATGAAGTCGAAGCCTTAAGTGCAACCTTAGCGGTGATACAAGAGTCCGATGATAAAC
GGGATCAACTTGCTCGTCATGCCAAAACATTAAGATCAGCATTAGTTAAATTAGGATTTACTATACGTAGTCAATCTCAA
ATTATTGCTTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCAGAGATTACTTAGAAGAACATGGGGTTTTTGGTGC
AGTGTTCTGTCGTCCTGCGACCGCCAAGAACAAAAATATTATCCGTTTATCTCTGAATAGTTCACTCACTCAAGAAGAGA
TAGACAAAATTATTCATGTTTGTGGCTTAGCCATCAACAATCCAAACTTATATTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

67.013

97.964

0.656

Multiple sequence alignment