Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPX94_RS13845 Genome accession   NZ_CP046849
Coordinates   149874..151922 (+) Length   682 a.a.
NCBI ID   WP_154116184.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 144874..156922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS13835 - 145648..146790 (+) 1143 WP_154116188.1 exonuclease SbcCD subunit D -
  GPX94_RS13840 - 146793..149837 (+) 3045 WP_154116186.1 SMC family ATPase -
  GPX94_RS13845 cqsS 149874..151922 (+) 2049 WP_154116184.1 hybrid sensor histidine kinase/response regulator Regulator
  GPX94_RS13850 cqsA 151987..153168 (-) 1182 WP_154116182.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX94_RS13855 - 153495..156224 (-) 2730 WP_158147669.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78923.85 Da        Isoelectric Point: 5.7769

>NTDB_id=408889 GPX94_RS13845 WP_154116184.1 149874..151922(+) (cqsS) [Vibrio cincinnatiensis strain F8054]
MNAIKKIYQYAEPNLTLVGWMGLIGFPVYYYVWAYLFPQPYESLGLRSFCSFLFAGIAFRHSLPKVLHRYLPVYYLFSIG
FCLPFFFFYMMLMNGWSTEWAMSFMASIFLHILLVHETKVMLMQALVASLAAYIIAYSVMDTEPSQLISLTYIPIFIFTY
VFGNLFYFRNQISHESKVSIAKSFGAGIAHEMRNPLSALKSSIDVFRSILPSTNSKNDNYTLTAQELAQLQEVLNHADEV
IHSGNETIDLLLTSIDQNRVSTSTFKKHSATAIVNNAIRSFSYPKMLDKSRVFATIEDEFDFLGSDTLLKFALYNLLKNA
FYYQNSESFRIDIDVKRQAGKNLIIVRDNGVGIAPEQLDEIFKDFYTFGKNNSYGLGLPFCRKVMRSFGGSIHCRSVLGE
WTEFILTFPDYDSERVKQIKLDLMKSKSVLYIGEEDIIYHHLNELAFYQGFTMYSINVEEAIHREEFEFEFDIILVSLNK
LSSQWDKLSLLENKLHFTEAKIGYLYDKNHHYPVNISRYLTVYPIEMHQLLLEHSLIMDQLFFEIEESSANRNQIKTPEV
CYQRRILLVDDNESLRIFSALLLEKQGYEVFQANNGKQALEIISTESVDLIIMDLDMPVMNGFDTTKAIRHLDADYHHVP
IIGYTGDDRSETISEIYKIGMNDYIVKPADKEILLQKIANWL

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=408889 GPX94_RS13845 WP_154116184.1 149874..151922(+) (cqsS) [Vibrio cincinnatiensis strain F8054]
ATGAATGCAATAAAAAAAATATACCAATATGCAGAGCCAAATCTAACGTTAGTCGGATGGATGGGGCTGATCGGTTTTCC
AGTTTATTACTATGTTTGGGCCTATCTTTTCCCGCAGCCATATGAGTCACTTGGGCTGCGTAGTTTTTGTTCGTTCCTGT
TTGCCGGTATCGCTTTTCGCCACTCTTTGCCTAAGGTGTTACACCGTTATTTACCCGTATATTATCTGTTCTCTATTGGA
TTTTGTTTACCTTTTTTCTTTTTCTATATGATGTTAATGAATGGCTGGTCCACAGAGTGGGCCATGTCCTTTATGGCCTC
TATTTTTTTACATATTTTACTGGTGCATGAAACGAAAGTGATGCTAATGCAAGCTTTGGTTGCATCACTCGCTGCTTATA
TTATTGCTTATTCTGTAATGGATACTGAACCTAGCCAGCTTATTTCATTAACTTATATTCCAATTTTTATTTTTACCTAT
GTATTTGGTAACTTATTTTATTTTCGGAATCAGATTTCTCATGAAAGCAAAGTGTCCATTGCAAAGTCTTTTGGTGCAGG
GATTGCCCATGAGATGCGTAACCCGCTGAGTGCATTAAAGTCATCGATAGATGTCTTCCGTTCTATTTTGCCGAGCACGA
ACTCAAAAAATGATAATTATACATTAACAGCTCAAGAGTTAGCCCAACTGCAAGAGGTGTTAAATCATGCCGATGAAGTG
ATCCATTCGGGTAATGAGACCATCGATTTACTACTGACCTCGATAGATCAAAATCGAGTGTCGACATCAACGTTCAAAAA
GCATTCAGCCACCGCAATCGTAAATAATGCGATCCGTTCATTTTCCTATCCAAAAATGTTAGACAAGTCGAGGGTGTTTG
CAACGATTGAAGATGAGTTTGATTTTTTAGGTAGTGATACCTTATTAAAGTTTGCCTTGTATAATCTATTGAAGAATGCA
TTTTATTACCAAAATAGTGAGTCTTTTAGAATTGATATTGACGTGAAGCGGCAAGCTGGAAAAAATCTGATCATAGTCAG
AGATAATGGTGTTGGAATCGCACCTGAGCAACTGGATGAAATTTTTAAAGACTTTTATACGTTTGGTAAAAATAATAGTT
ATGGCTTAGGGCTACCTTTTTGCCGAAAAGTGATGCGCTCTTTTGGTGGGAGTATCCACTGTCGTTCAGTCTTGGGAGAA
TGGACCGAATTTATATTGACCTTTCCTGATTATGATTCTGAGCGAGTAAAACAAATTAAATTGGATTTAATGAAGTCTAA
ATCTGTTCTCTATATTGGTGAGGAGGACATTATTTACCACCATTTGAATGAACTGGCTTTTTATCAAGGCTTTACAATGT
ATTCTATCAATGTTGAAGAAGCGATACATCGAGAAGAATTTGAATTCGAGTTTGATATTATTCTGGTTAGCCTAAATAAA
CTCTCATCACAATGGGATAAGCTGAGTTTATTAGAAAATAAATTACATTTTACAGAGGCAAAAATTGGATACCTATATGA
TAAGAATCATCATTATCCGGTTAATATTTCACGTTACTTAACCGTGTATCCAATTGAAATGCACCAGCTATTGCTTGAAC
ATTCATTAATAATGGATCAGCTGTTTTTTGAAATAGAGGAAAGTTCGGCTAATAGAAATCAAATTAAAACGCCTGAAGTC
TGCTATCAACGGCGAATCTTATTGGTGGATGATAATGAATCATTGCGTATTTTTTCTGCATTATTATTGGAAAAACAAGG
CTATGAAGTTTTTCAGGCCAATAATGGTAAACAGGCATTAGAGATTATTTCAACTGAAAGTGTGGATTTAATTATCATGG
ACCTTGATATGCCGGTAATGAATGGTTTCGATACCACAAAGGCTATACGTCATTTAGATGCAGATTATCATCATGTTCCT
ATTATTGGATATACAGGCGATGATCGTTCAGAAACGATTTCTGAGATTTACAAAATAGGCATGAATGATTATATCGTTAA
GCCAGCAGATAAAGAGATTCTTTTGCAAAAAATAGCAAACTGGTTATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.076

100

0.562

Multiple sequence alignment