Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPX94_RS06565 Genome accession   NZ_CP046848
Coordinates   1409056..1409688 (-) Length   210 a.a.
NCBI ID   WP_078926043.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404056..1414688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS06555 aceF 1405420..1407303 (+) 1884 WP_154115276.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPX94_RS06560 lpdA 1407557..1408984 (+) 1428 WP_078926042.1 dihydrolipoyl dehydrogenase -
  GPX94_RS06565 opaR 1409056..1409688 (-) 633 WP_078926043.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPX94_RS06570 hpt 1410030..1410560 (+) 531 WP_078926044.1 hypoxanthine phosphoribosyltransferase -
  GPX94_RS06575 can 1410636..1411304 (-) 669 WP_078926045.1 carbonate dehydratase -
  GPX94_RS06580 - 1411634..1412557 (+) 924 WP_078926046.1 ABC transporter ATP-binding protein -
  GPX94_RS06585 - 1412557..1413327 (+) 771 WP_078926047.1 ABC transporter permease -
  GPX94_RS06590 panC 1413483..1414364 (-) 882 WP_078926048.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24217.79 Da        Isoelectric Point: 5.6489

>NTDB_id=408877 GPX94_RS06565 WP_078926043.1 1409056..1409688(-) (opaR) [Vibrio cincinnatiensis strain F8054]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVRQFSNFL
TDQIDLDLDAKENMHNIASAMVNLAIDDCYWLKVWFEWSASTREEVWPLFVSSNKTNQLLIRNIFVKAIERGEVCAQLDA
ENLAMLFHGVCYSLFVQANRVRDEQKVCQLVNHYLDMLCIYNREHLSIAS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408877 GPX94_RS06565 WP_078926043.1 1409056..1409688(-) (opaR) [Vibrio cincinnatiensis strain F8054]
ATGGACGCATCTATTGAGAAACGCCCCAGAACACGGCTTTCTCCGCAAAAACGTAAACAACAACTCATGGAAATCGCACT
GGAAGTGTTTGCCAAACGAGGGATTGGTCGTGGAGGGCATGCAGATATCGCTGAAATTGCCCAAGTATCTGTGGCAACCG
TCTTTAACTACTTTCCTACTCGGGAAGATTTGGTGGACGATGTACTAACCTTTGTGGTTCGTCAATTCTCTAACTTTCTC
ACCGATCAGATTGATCTTGACCTCGATGCTAAAGAAAATATGCACAACATTGCTTCAGCAATGGTAAATCTGGCTATTGA
TGATTGTTATTGGCTAAAAGTATGGTTTGAATGGAGCGCTTCAACTCGAGAGGAAGTCTGGCCTTTATTTGTCTCGAGCA
ATAAAACGAACCAGTTATTGATTAGAAATATTTTTGTCAAAGCTATCGAGCGTGGTGAAGTTTGTGCTCAACTTGATGCC
GAAAATTTAGCGATGCTATTTCACGGCGTTTGTTATTCTCTCTTTGTACAAGCCAACCGAGTGCGTGATGAACAAAAAGT
CTGCCAGTTAGTCAACCATTATTTAGATATGCTGTGCATCTATAACCGAGAACATTTATCTATCGCCTCTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

78.218

96.19

0.752
  hapR Vibrio cholerae C6706

76.119

95.714

0.729
  hapR Vibrio cholerae strain A1552

76.119

95.714

0.729

Multiple sequence alignment