Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY12_RS19100 Genome accession   NZ_CP046847
Coordinates   873190..874287 (-) Length   365 a.a.
NCBI ID   WP_022579009.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 868190..879287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS19080 - 868652..869050 (+) 399 WP_000831409.1 YgiW/YdeI family stress tolerance OB fold protein -
  GPY12_RS19085 - 869263..869781 (+) 519 WP_000932976.1 hypothetical protein -
  GPY12_RS19090 - 869940..870605 (+) 666 WP_148534152.1 flagellar brake protein -
  GPY12_RS19095 luxQ 870597..873170 (-) 2574 WP_001026296.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPY12_RS19100 luxP 873190..874287 (-) 1098 WP_022579009.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY12_RS19105 traF 874486..875646 (-) 1161 WP_148546493.1 conjugal transfer protein TraF -
  GPY12_RS19110 - 875747..876046 (-) 300 WP_000449703.1 GIY-YIG nuclease family protein -
  GPY12_RS19115 - 876046..876696 (-) 651 WP_148546492.1 YceH family protein -
  GPY12_RS19120 - 876739..876936 (-) 198 WP_001246067.1 hypothetical protein -
  GPY12_RS19125 - 877125..877445 (+) 321 WP_001089530.1 DUF496 family protein -
  GPY12_RS19130 - 877857..878108 (+) 252 WP_005520676.1 YgjV family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41747.47 Da        Isoelectric Point: 6.4002

>NTDB_id=408849 GPY12_RS19100 WP_022579009.1 873190..874287(-) (luxP) [Vibrio mimicus strain F9458]
MKRNILLSLLLTATLFTSATYADSLKGYWHYDEFLTEFPEQQNLTDQLAKTVRDKPIPLSVKQRQPVVISVVYPGQQISD
YWVRNIKAFEKRMDELGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGRQPMMYIGFDHELGALQLAQQYQKIAPKQKPYSVLYFSEGYISEARGDTFIQQMNEEHRFQLASSYYTKAT
EQSGYEATLNIVKNNPEIGFIYACATDIALGAAQALKELGRQDILLNGWGGGSAELDALAKGDLNLTIMRMNDDTGVAMA
EAIKWDLEEKAVPLVYSGDFEIVTQQDSSKHVEALKARAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=408849 GPY12_RS19100 WP_022579009.1 873190..874287(-) (luxP) [Vibrio mimicus strain F9458]
ATGAAAAGAAATATACTGCTGTCGCTGCTTCTGACTGCAACGCTCTTCACTTCAGCAACTTATGCTGATTCTTTGAAAGG
GTATTGGCATTATGATGAGTTCCTGACGGAATTCCCCGAGCAGCAGAATCTGACCGATCAGCTAGCAAAAACAGTACGCG
ATAAGCCTATACCACTCAGTGTTAAACAGCGGCAACCCGTCGTGATTTCGGTCGTGTATCCTGGACAACAGATCTCCGAT
TATTGGGTTCGTAATATCAAGGCTTTCGAGAAACGGATGGATGAACTCGGTATCCGTTATCAAATTAATCAAGTTTTTAC
TCGTCCTAATCTCGATACTCGCCAGCAAAGTGTCTCCTTGATGGAAGCACTCAAAAACAAGAGCGATTATCTGATTTTCA
CTTTAGATACCACGCGTCACCGTAAGTTTATTGAGCATGTGTTGCACTCTTCTGAAACCAAGCTGATTTTGCAAAACATC
ACGACCCCCGTAAAAGATTGGCAAGGCCGTCAACCTATGATGTACATCGGCTTTGATCACGAGCTAGGGGCTTTGCAGCT
CGCGCAGCAGTACCAAAAAATTGCCCCTAAACAAAAACCATACTCCGTTCTCTATTTCTCTGAAGGTTACATCAGTGAAG
CTCGGGGCGACACTTTCATTCAGCAGATGAATGAAGAACACCGCTTTCAACTGGCTTCTTCGTATTACACTAAAGCGACC
GAACAAAGTGGTTACGAGGCGACATTGAACATAGTCAAAAATAATCCAGAGATTGGTTTCATTTATGCCTGTGCAACGGA
TATTGCTTTGGGAGCCGCTCAAGCATTAAAAGAACTTGGCCGACAAGACATTTTACTGAATGGCTGGGGTGGCGGTTCAG
CCGAATTGGATGCTTTGGCCAAAGGCGATCTGAATCTCACTATCATGCGAATGAACGATGATACAGGCGTGGCAATGGCG
GAAGCCATTAAGTGGGATTTGGAAGAGAAAGCCGTACCGCTCGTCTATTCTGGTGATTTTGAAATCGTGACCCAACAAGA
TTCATCAAAACATGTTGAAGCACTGAAAGCCCGCGCTTTCCGTTATTCGGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

83.836

100

0.838

Multiple sequence alignment