Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY12_RS17730 Genome accession   NZ_CP046847
Coordinates   587490..588659 (-) Length   389 a.a.
NCBI ID   WP_148546908.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 582490..593659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS17725 cqsS 585347..587407 (+) 2061 WP_148546907.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY12_RS17730 cqsA 587490..588659 (-) 1170 WP_148546908.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY12_RS17735 - 588856..589818 (-) 963 WP_001104794.1 TDT family transporter -
  GPY12_RS17740 clcA 589918..591324 (-) 1407 WP_005517288.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY12_RS17745 - 591806..592795 (+) 990 WP_000981996.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43774.04 Da        Isoelectric Point: 6.6558

>NTDB_id=408846 GPY12_RS17730 WP_148546908.1 587490..588659(-) (cqsA) [Vibrio mimicus strain F9458]
MNRTHLPDFIQDKITHYIENYFDINKNGKHLVLGKQARSEDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTVAPLAELVNLSKEFGCALLVDESHSLGTHGPNGAGLLAELNLTHEVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLDIIECADDKRHHLEKMAKKLRIGLTQLGMTIRSESQIIGL
ETGDERNTEKVRDFLENNGLFGSVFCRPATSKNKNIIRLSLNSDVTEKQITRIIEVCTDAVKCSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=408846 GPY12_RS17730 WP_148546908.1 587490..588659(-) (cqsA) [Vibrio mimicus strain F9458]
ATGAATAGAACACATCTTCCTGATTTTATTCAGGATAAGATAACTCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGCAAACATCTAGTATTGGGAAAACAAGCTAGAAGTGAAGATATTATTTTGCAAAGTAATGATTATCTCGCACTGGCCA
ATCATCCTTTAATTAAAGCGCGTTTAGCAAAGTCTTTGCTTGAGGAACAGCAGAGCTTATTTATGTCAGCCTCATTCTTA
CAAAATGATTATGACAAACCCATGATAGAGAAGCGCTTGGCCAAGTTCACAGGCTTTGATGAGTGTTTACTGTCTCAATC
CGGTTGGAATGCCAACGTAGGGTTGTTACAAACCATTTGCCAACCTAACACCAATGTCTACATCGACTTTTTCGCTCACA
TGTCATTGTGGGAAGGAGCACGCTATGCGAACGCTCAAGCCCACCCTTTTATGCACAATAACTGTGACCATTTACGTATG
CTCATCCAGCGCCATGGGCCAGGAATCATAGTTGTCGATTCCATTTACAGCACTCTTGGCACTGTTGCGCCACTGGCAGA
GCTAGTCAATCTCAGTAAGGAGTTCGGCTGCGCTTTACTGGTTGATGAATCGCACTCTTTGGGGACGCACGGCCCTAACG
GTGCAGGTTTACTCGCTGAGTTGAACCTCACCCATGAAGTGCATTTCATGACCGCCAGCTTAGCCAAAACCTTTGCTTAT
CGAGCTGGAGCGATTTGGTGTAATAATGAGGTCAACCGTTGCGTGCCATTTATTAGCTATCCGGCGATTTTTAGTTCGAC
CTTACTTCCTTATGAAGCGGCTGGCTTAGAAACCACGTTAGATATTATTGAATGCGCGGATGATAAACGGCATCACTTAG
AAAAAATGGCCAAAAAACTGCGCATAGGGTTAACCCAATTAGGCATGACCATTCGTAGTGAAAGCCAAATTATTGGTTTA
GAAACGGGGGATGAGCGAAATACAGAAAAAGTCCGTGATTTTTTAGAAAACAATGGCTTATTTGGTTCTGTTTTTTGTCG
ACCTGCCACATCAAAAAACAAGAATATTATCCGCTTATCACTCAATAGTGATGTGACGGAAAAGCAAATAACTCGGATAA
TTGAAGTATGCACTGATGCAGTAAAATGTTCAGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.26

100

0.913

Multiple sequence alignment