Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY12_RS17725 Genome accession   NZ_CP046847
Coordinates   585347..587407 (+) Length   686 a.a.
NCBI ID   WP_148546907.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 580347..592407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS17715 - 581063..582202 (+) 1140 WP_148546905.1 exonuclease SbcCD subunit D -
  GPY12_RS17720 - 582204..585245 (+) 3042 WP_158139793.1 SMC family ATPase -
  GPY12_RS17725 cqsS 585347..587407 (+) 2061 WP_148546907.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY12_RS17730 cqsA 587490..588659 (-) 1170 WP_148546908.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY12_RS17735 - 588856..589818 (-) 963 WP_001104794.1 TDT family transporter -
  GPY12_RS17740 clcA 589918..591324 (-) 1407 WP_005517288.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78612.69 Da        Isoelectric Point: 5.4132

>NTDB_id=408845 GPY12_RS17725 WP_148546907.1 585347..587407(+) (cqsS) [Vibrio mimicus strain F9458]
MTVSMEVIKKVYQYAEPNFSLVGWMGMLGYPAYYFIWEYWFPQTYENLGLRFVAALLFAGLAFRESLPNKWKRYMPYYFL
LTIGFCLPFFFCFMMLMNNWSTIWAMSFMASIFLHILLVHDTKVMALQAITSILMAYVAVYGFTDFQPNTLIEWPYVPVF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMLPKPQAAAQSTYPLDAQELDLLHQILN
EADDVIYSGNNTIDLLLTSIDENRVSTTSFKKYAAAEVIEKALKSFPYKNAADQHAIQLDVRQPFDFFGSDTLLTYALFN
LLKNAFYYQKEQFSVCIQIEQSAEHNLIKVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCFS
KHGEWTEFVLTFPRYESKIVREIKTDLLKSKSVIYIGSNQSIVRELNQLAAEEEFGFTALSAQQAVRRQDYEFEFDLILL
DLDDATQQGELLPKLEGTLSFAEGCIGYIYDPSKEYAVNINRYLHIQPISIHSVLKKTSKVIDRLLFEQDSLVMNRNIIP
LQKSRHERRILVVDDNQSIRTFTSILLEQQGYEVVQANDGCEVIAYMDTQTIDLVLMDIEMPKISGLEATHLIRSSDRDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=408845 GPY12_RS17725 WP_148546907.1 585347..587407(+) (cqsS) [Vibrio mimicus strain F9458]
GTGACGGTGAGCATGGAAGTGATAAAAAAAGTTTACCAGTACGCGGAACCCAATTTTTCATTGGTGGGGTGGATGGGGAT
GCTCGGCTATCCTGCCTATTACTTCATTTGGGAATACTGGTTTCCGCAAACCTATGAAAACTTAGGTTTGCGTTTTGTTG
CTGCATTGTTGTTCGCTGGGCTTGCTTTTCGGGAGTCATTGCCGAATAAGTGGAAGCGGTATATGCCGTACTACTTTTTG
CTCACCATAGGTTTTTGCTTACCTTTTTTCTTTTGTTTCATGATGTTGATGAACAACTGGTCGACCATTTGGGCGATGTC
GTTCATGGCATCCATCTTTTTACACATCCTCTTAGTGCACGATACTAAGGTGATGGCGCTGCAAGCCATTACCTCGATTT
TGATGGCTTATGTGGCGGTGTATGGCTTCACGGATTTTCAACCGAATACCTTGATTGAATGGCCGTATGTGCCTGTTTTC
TTGTTCACTTATGTCTTCGGCAATTTGTGTTTCTTCCGTAACCAAATTTCCCACGAAACCAAAGTCTCCATTGCTAAAAC
ATTTGGTGCTGGGATCGCACATGAAATGCGTAACCCACTGAGTGCTTTGAAAACATCAATAGACGTCATTCGTACCATGC
TTCCTAAGCCTCAGGCAGCCGCGCAATCGACTTATCCATTGGATGCACAAGAACTGGATCTTCTACACCAGATTTTGAAT
GAGGCGGATGATGTTATCTATTCAGGCAATAACACCATTGATTTGTTGTTGACCTCAATTGATGAAAACCGTGTTTCCAC
CACAAGTTTTAAAAAATACGCTGCGGCTGAAGTGATTGAGAAAGCACTCAAGAGCTTTCCTTATAAAAATGCCGCTGATC
AACACGCGATTCAATTGGATGTTCGTCAGCCATTTGATTTTTTTGGTAGTGATACCTTGTTGACTTATGCCTTGTTCAAC
TTACTGAAGAATGCCTTTTACTATCAGAAAGAACAATTTTCCGTTTGTATTCAAATTGAGCAGAGTGCTGAACACAACCT
AATTAAAGTGCGTGATAACGGGGTAGGTATTGCTCCTGAAATGTTGGAAGACATCTTTCGTGACTTTTATACCTTTGGCA
AAAATGGCAGTTACGGCCTAGGATTGCCGTTTTGTCGTAAAGTGATGACTGCATTTGGCGGCACCATTCGCTGTTTTTCT
AAGCATGGTGAGTGGACGGAGTTCGTGCTGACGTTCCCACGTTACGAGTCAAAAATCGTTAGAGAAATTAAAACCGATTT
ATTAAAGTCCAAATCAGTTATTTACATAGGCTCGAATCAGTCGATTGTTCGAGAACTGAATCAGTTAGCGGCAGAGGAAG
AGTTTGGCTTTACTGCACTTTCAGCTCAGCAAGCGGTAAGACGGCAAGACTATGAATTTGAATTCGACCTAATCTTACTG
GACCTAGATGATGCCACTCAGCAAGGCGAACTTTTACCCAAACTCGAAGGAACGTTGAGTTTCGCGGAAGGCTGTATCGG
GTATATCTATGACCCTAGCAAAGAGTATGCGGTGAACATCAACCGTTACCTGCATATTCAACCGATCAGCATCCATTCCG
TGCTGAAGAAAACCAGCAAAGTCATTGATCGTCTGCTCTTTGAGCAAGACTCTCTGGTGATGAATCGCAACATCATTCCG
CTGCAAAAAAGTCGCCATGAACGGCGAATTCTTGTCGTTGATGACAACCAATCTATCCGTACTTTCACATCGATTTTGCT
TGAACAGCAAGGATATGAGGTTGTGCAAGCGAATGATGGGTGCGAGGTGATCGCTTATATGGATACTCAGACTATCGACT
TAGTGTTGATGGACATTGAGATGCCTAAAATCAGTGGCTTAGAAGCGACACATCTCATCCGAAGCTCTGATCGTGATTAT
AAAAACATTCCTATCATTGGATATACAGGTGATAACAGCCCGAAAACCTTAGCGTTGGTGCAAACATCCGGCATGAATGA
TTTCATTGTTAAGCCTGCTGACCGTGATGTATTACTGAATAAAGTAGCGGCTTGGGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(570-682)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

84.694

100

0.847

Multiple sequence alignment