Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   GPY12_RS02970 Genome accession   NZ_CP046846
Coordinates   603941..604552 (-) Length   203 a.a.
NCBI ID   WP_000340102.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 598941..609552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS02940 sspB 599019..599492 (+) 474 WP_187372769.1 ClpXP protease specificity-enhancing factor -
  GPY12_RS02945 - 599561..600130 (-) 570 WP_000836324.1 BON domain-containing protein -
  GPY12_RS02950 - 600133..600723 (-) 591 WP_000887295.1 phosphoheptose isomerase -
  GPY12_RS02955 - 600727..601050 (-) 324 WP_005511280.1 YraN family protein -
  GPY12_RS02960 - 601082..602887 (-) 1806 WP_158139670.1 penicillin-binding protein activator -
  GPY12_RS02965 rsmI 602957..603823 (+) 867 WP_000131534.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GPY12_RS02970 hapR 603941..604552 (-) 612 WP_000340102.1 quorum-sensing master transcriptional regulator HapR Regulator
  GPY12_RS02975 hpt 604846..605379 (+) 534 WP_000683347.1 hypoxanthine phosphoribosyltransferase -
  GPY12_RS02980 can 605473..606141 (-) 669 WP_001114113.1 carbonate dehydratase -
  GPY12_RS02985 - 606290..607942 (+) 1653 WP_000484920.1 SulP family inorganic anion transporter -
  GPY12_RS02990 - 608133..609050 (+) 918 WP_000271060.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23619.27 Da        Isoelectric Point: 6.3371

>NTDB_id=408817 GPY12_RS02970 WP_000340102.1 603941..604552(-) (hapR) [Vibrio mimicus strain F9458]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLEAKSNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=408817 GPY12_RS02970 WP_000340102.1 603941..604552(-) (hapR) [Vibrio mimicus strain F9458]
ATGGACGCATCAATCGAAAAACGCCCTCGGACTCGGCTATCTCCACAAAAACGTAAACTACAACTGATGGAAATCGCATT
AGAAGTGTTTGCAACTCGCGGTATTGGCCGCGGCGGTCATGCCGACATCGCTGAAATTGCGCAAGTTTCAGTGGCGACAG
TATTTAACTATTTCCCAACTCGTGAAGATCTGGTCGACGACGTACTGAACTTTGTAGTTCGTCAGTATTCCAACTTCCTT
ACTGATCACATCGATCTAGATTTAGAAGCTAAAAGCAATCTACAAACACTGTGCAAAGAAATGGTGAAACTCGCCATGAC
TGACTGCCATTGGCTAAAAGTATGGTTTGAATGGAGTGCTTCGACTCGTGATGAAGTTTGGCCGTTGTTTGTTTCGACCA
ACCGCACCAACCAGTTACTGATCAAAAACATGTTCATCAAAGCGATGGAGCGTGGTGAATTGTGTGAGAAACACGATGTA
GACAATATGGCGAGCCTGTTCCACGGCATCTTCTACTCTATCTTCCTACAAGTAAATCGCTTGGGCGAACAGGAAGCAGT
GTATAAGTTAGTCGATAGCTATCTCAACATGCTGTGTATCTACAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.737

97.537

0.719

Multiple sequence alignment