Detailed information NTG0408780

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H0X92_RS18745
• Genome accession: NZ_CP059130
• Coordinates: 3810305..3811297 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ec55
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3805305..3816297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0X92_RS18725 (H0X92_18660)	ygbM	3805943..3806719 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
H0X92_RS18730 (H0X92_18665)	ygbN	3806808..3808172 (+)	1365	WP_000104433.1	GntP family transporter	-
H0X92_RS18735 (H0X92_18670)	-	3808315..3809358 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
H0X92_RS18740 (H0X92_18675)	-	3809583..3810134 (+)	552	WP_001179444.1	flavodoxin family protein	-
H0X92_RS18745 (H0X92_18680)	rpoS	3810305..3811297 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H0X92_RS18750 (H0X92_18685)	nlpD	3811360..3812454 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
H0X92_RS18755 (H0X92_18690)	pcm	3812639..3813265 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H0X92_RS18760 (H0X92_18695)	surE	3813259..3814020 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H0X92_RS18765 (H0X92_18700)	truD	3814001..3815050 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
H0X92_RS18770 (H0X92_18705)	ispF	3815047..3815526 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H0X92_RS18775 (H0X92_18710)	ispD	3815526..3816236 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=408780 H0X92_RS18745 WP_000081550.1 3810305..3811297(-) (rpoS) [Escherichia coli strain Ec55]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=408780 H0X92_RS18745 WP_000081550.1 3810305..3811297(-) (rpoS) [Escherichia coli strain Ec55]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715