Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SSUD12_RS04705 Genome accession   NC_017621
Coordinates   930012..930680 (+) Length   222 a.a.
NCBI ID   WP_024381849.1    Uniprot ID   A0ABV2ERC1
Organism   Streptococcus suis D12     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 925012..935680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS11685 (SSUD12_0909) - 925127..925264 (+) 138 WP_014637918.1 hypothetical protein -
  SSUD12_RS04670 (SSUD12_0910) - 925290..926009 (+) 720 WP_014637919.1 TraX family protein -
  SSUD12_RS11690 (SSUD12_0911) - 926108..926248 (+) 141 WP_014637920.1 hypothetical protein -
  SSUD12_RS04680 (SSUD12_0912) - 926302..926649 (+) 348 WP_014637921.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  SSUD12_RS04685 (SSUD12_0913) - 926658..927410 (+) 753 WP_014637922.1 ABC transporter ATP-binding protein -
  SSUD12_RS04690 (SSUD12_0914) - 927411..929381 (+) 1971 WP_014637923.1 ABC transporter permease -
  SSUD12_RS04695 (SSUD12_0915) relB 929472..929723 (+) 252 WP_014637924.1 type II toxin-antitoxin system RelB family antitoxin -
  SSUD12_RS04700 (SSUD12_0916) - 929707..929973 (+) 267 WP_014637925.1 type II toxin-antitoxin system RelE family toxin -
  SSUD12_RS04705 (SSUD12_0917) braR 930012..930680 (+) 669 WP_024381849.1 response regulator transcription factor Regulator
  SSUD12_RS04710 (SSUD12_0918) - 930677..931618 (+) 942 WP_014637927.1 sensor histidine kinase -
  SSUD12_RS04715 (SSUD12_0919) - 931695..933203 (+) 1509 Protein_877 phosphomannomutase/phosphoglucomutase -
  SSUD12_RS04720 (SSUD12_0921) xerS 933273..934343 (-) 1071 WP_014637928.1 tyrosine recombinase XerS Machinery gene
  SSUD12_RS04725 (SSUD12_0922) - 934508..935023 (-) 516 WP_014637929.1 AAA family ATPase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25564.39 Da        Isoelectric Point: 4.7792

>NTDB_id=40877 SSUD12_RS04705 WP_024381849.1 930012..930680(+) (braR) [Streptococcus suis D12]
MMKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNESEQVQLSPTETKIL
SALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=40877 SSUD12_RS04705 WP_024381849.1 930012..930680(+) (braR) [Streptococcus suis D12]
ATGATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCACCTAGGCAAATC
GTATCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCTGAAATCAAACCAGACTTGGTGCTGATGG
ACATTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATC
TCCTCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCT
GGGGATTTTGGATGCCAAAATCGGCGCCTTCTTGCGTCGGGTTAATCAATTCAGCAAATCAACTGATTTGTCAATTGACC
AGTTCCAGCTTAGTTTGGACGGGCGATTTTCAAATGAATCGGAACAGGTTCAATTATCTCCTACGGAAACCAAGATTTTG
TCAGCCTTACTAGAACGACAAGGGCAGATTGTTAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTAT
CGATCAGAATACGCTCAATGTAAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACCG
TTCGTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.099

0.468

Multiple sequence alignment