Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY01_RS03315 Genome accession   NZ_CP046838
Coordinates   760338..762398 (-) Length   686 a.a.
NCBI ID   WP_080285403.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 755338..767398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS03300 clcA 756355..757761 (+) 1407 WP_000107456.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY01_RS03305 - 757908..758870 (+) 963 WP_001104009.1 TDT family transporter -
  GPY01_RS03310 cqsA 759067..760236 (+) 1170 WP_001966141.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY01_RS03315 cqsS 760338..762398 (-) 2061 WP_080285403.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  GPY01_RS03320 - 762495..765536 (-) 3042 WP_032471594.1 SMC family ATPase -
  GPY01_RS03325 - 765538..766677 (-) 1140 WP_032471593.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78265.14 Da        Isoelectric Point: 5.6283

>NTDB_id=408664 GPY01_RS03315 WP_080285403.1 760338..762398(-) (cqsS) [Vibrio cholerae strain 2011EL-1271]
MIVSMDVIKRVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQSYENLGLRCAAAVLFGGLVFRDSMPKKWQRYMPGYFL
FTIGFCLPFFFAFMMLMNDWSTIWAMSFMASIFLHILLVHDTRVMALQALFSVLVAYLAVYGLTDFHPTTLIEWQYIPIF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRISIEQTREQNLIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMSAFGGTIRCAS
QQGQWTEFVLSFPRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFTAISAQQAVRRQDYEFEFDLILL
DLDDAIAQGELLPKLEGTLSFAGGCIGYVYDPGKTYAVNINRYLRIQPISIHSILRKPKTIIERLLFEQESLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEHAY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=408664 GPY01_RS03315 WP_080285403.1 760338..762398(-) (cqsS) [Vibrio cholerae strain 2011EL-1271]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCAATACGCAGAACCTAATCTGTCCTTAGTCGGATGGATGGGCAT
GCTTGGCTTTCCTGCCTACTACTTCATCTGGGAATATTGGTTTCCGCAATCTTACGAAAATTTAGGGCTGCGCTGTGCGG
CAGCGGTGCTGTTTGGTGGGCTGGTGTTTCGTGATTCGATGCCTAAGAAATGGCAGCGGTATATGCCGGGCTATTTTCTA
TTCACCATAGGTTTCTGCTTACCCTTTTTCTTCGCTTTTATGATGTTAATGAACGACTGGTCGACAATTTGGGCCATGTC
GTTTATGGCGTCCATTTTTCTGCATATTCTCTTAGTGCACGATACGAGAGTGATGGCGTTACAAGCTCTTTTCTCCGTGT
TGGTGGCCTATCTTGCGGTATATGGTTTGACGGATTTTCACCCGACCACTTTGATTGAATGGCAATACATACCGATCTTT
TTGTTTACTTATGTATTTGGGAATTTATGTTTTTTCCGTAACCAAATTTCTCATGAGACCAAAGTGTCGATTGCCAAAAC
GTTCGGAGCGGGGATTGCCCATGAAATGCGTAATCCACTCAGCGCTTTGAAAACGTCGATTGATGTTGTGCGAACCATGA
TCCCTAAACCGCAAACTGCAGCTCATACGGATTATTCCTTGGATGCGCAAGAGCTGGATCTGCTGCATCAAATTTTGAAT
GAAGCTGATGATGTCATCTACTCTGGCAATAACGCGATTGATTTGCTGCTCACCTCGATTGATGAAAACCGCGTCTCTCC
GGCGAGTTTTAAAAAACACTCCGTAGTGGATGTGATTGAAAAAGCGGTGAAAACTTTTCCGTATAAAAATGCAGCGGACC
AGCACTCGGTAGAGCTTGAAGTGCATCAGCCGTTTGACTTTTTTGGCAGTGATACTCTACTGACTTATGCGCTATTTAAC
CTGTTGAAAAATGCCTTCTATTATCAAAAAGAGCATTTCTCGGTTCGTATTTCCATTGAACAAACCCGTGAGCAGAACCT
TATTCGAGTCCGTGATAACGGCGTGGGGATTGCGCCAGAGATGTTGGAAGACATTTTCCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGATTGCCATTTTGCCGCAAAGTGATGTCCGCATTTGGGGGGACGATTCGCTGTGCGTCT
CAACAAGGTCAATGGACAGAATTCGTATTGAGCTTTCCTCGTTACGATTCCGATACGGTTAACGAGATAAAAACAGAACT
GCTGAAAACCAAATCGCTCATTTATATCGGCTCAAATCAAGCTATCGTTCGAGAGTTAAATCAGCTCGCAGTAGAAGATG
AGTTTGGTTTTACCGCTATTTCTGCGCAGCAAGCAGTAAGACGCCAAGATTATGAGTTTGAGTTCGACCTTATTTTGCTC
GACCTTGATGACGCTATAGCGCAGGGAGAGTTGCTGCCCAAACTCGAAGGTACATTGAGTTTTGCAGGAGGTTGTATCGG
CTATGTGTATGACCCAGGTAAAACGTATGCGGTAAACATCAATCGTTATCTGCGCATCCAACCGATCAGTATTCACTCTA
TTCTCAGAAAGCCTAAGACAATCATCGAGCGCTTGTTGTTTGAACAAGAGTCTTTATCGATGAATCGTAACGTGATCCCT
TTGCAAAAGAGTCGGCATGAACGGCGCATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCCATTTTGCT
TGAACAACAAGGCTATGAAGTGGTGCAAGCCAACGATGGGAGTGAAGTGCTCAAGCATATGGAGAGCCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCCAATGTTGGTGGATTGGAAGCGACGCGTTTAATTCGTGGCTCTGAACATGCTTAC
AAAAATATTCCGATCATCGGTTATACTGGTGATAACAGCCCCAAAACTTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTTATTGTCAAGCCAGCGGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(570-682)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

98.688

100

0.987

Multiple sequence alignment