Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY01_RS03310 Genome accession   NZ_CP046838
Coordinates   759067..760236 (+) Length   389 a.a.
NCBI ID   WP_001966141.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 754067..765236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS03295 - 754899..755888 (-) 990 WP_032471595.1 GTP-binding protein -
  GPY01_RS03300 clcA 756355..757761 (+) 1407 WP_000107456.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY01_RS03305 - 757908..758870 (+) 963 WP_001104009.1 TDT family transporter -
  GPY01_RS03310 cqsA 759067..760236 (+) 1170 WP_001966141.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY01_RS03315 cqsS 760338..762398 (-) 2061 WP_080285403.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43576.69 Da        Isoelectric Point: 6.4943

>NTDB_id=408663 GPY01_RS03310 WP_001966141.1 759067..760236(+) (cqsA) [Vibrio cholerae strain 2011EL-1271]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIKSADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQITKIIEVCSDAINCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=408663 GPY01_RS03310 WP_001966141.1 759067..760236(+) (cqsA) [Vibrio cholerae strain 2011EL-1271]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
TGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTCTGGCTAAGTTCACAGGCTTTGATGAATGTCTATTATCTCAATC
TGGTTGGAATGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCGCGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGCCCTGGGATCATTGTCGTAGACTCGATTTACAGCACGTTAGGTACGATTGCACCGCTAGCGGA
ACTGGTCAATATCAGTAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGTACACATGGTCCTAATG
GTGCAGGCTTACTGGCAGAATTAGGCCTTACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCAGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACCACATTAGAGATTATTAAGTCTGCGGATAATCGGCGTCAGCATTTAG
ATCGTATGGCGAGAAAATTACGCATAGGATTATCCCAGTTGGGATTAACCATTCGAAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCGAAGAATAAAAACATTATTCGTTTATCACTCAATAGTGATGTGAACGATGAACAAATCACCAAAATAA
TTGAGGTTTGCTCTGATGCGATCAACTGTGGTGATTTTTATTTCCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

98.972

100

0.99

Multiple sequence alignment