Detailed information NTG0408639

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY41_RS18605
• Genome accession: NZ_CP046835
• Coordinates: 2285304..2286296 (-)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 07-2444
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2280304..2291296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY41_RS18585	recX	2280326..2280787 (-)	462	WP_038964353.1	recombination regulator RecX	-
GPY41_RS18590	recA	2280897..2281946 (-)	1050	WP_158123823.1	recombinase RecA	Machinery gene
GPY41_RS18595	pncC	2282080..2282583 (-)	504	WP_158123824.1	nicotinamide-nucleotide amidase	-
GPY41_RS18600	mutS	2282667..2285228 (+)	2562	WP_158123825.1	DNA mismatch repair protein MutS	-
GPY41_RS18605	rpoS	2285304..2286296 (-)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
GPY41_RS18610	-	2286377..2287273 (-)	897	WP_199252262.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY41_RS18615	-	2287317..2287943 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY41_RS18620	surE	2287946..2288713 (-)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
GPY41_RS18625	truD	2288719..2289762 (-)	1044	WP_158123827.1	tRNA pseudouridine(13) synthase TruD	-
GPY41_RS18630	ispF	2289798..2290274 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY41_RS18635	ispD	2290271..2290984 (-)	714	WP_158123828.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY41_RS18640	ftsB	2290984..2291265 (-)	282	WP_017420271.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=408639 GPY41_RS18605 WP_017420278.1 2285304..2286296(-) (rpoS) [Vibrio vulnificus strain 07-2444]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=408639 GPY41_RS18605 WP_017420278.1 2285304..2286296(-) (rpoS) [Vibrio vulnificus strain 07-2444]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTTGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCACGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTTGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAGGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833