Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SSUD12_RS03135 Genome accession   NC_017621
Coordinates   610454..611050 (+) Length   198 a.a.
NCBI ID   WP_014637682.1    Uniprot ID   A0AA96ZYK5
Organism   Streptococcus suis D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 605454..616050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS03120 (SSUD12_0597) vicX 605838..606641 (+) 804 WP_014637679.1 MBL fold metallo-hydrolase Regulator
  SSUD12_RS10995 (SSUD12_0598) vga(F) 606899..608284 (+) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  SSUD12_RS03130 (SSUD12_0599) pbp2b 608376..610445 (+) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  SSUD12_RS03135 (SSUD12_0600) recR 610454..611050 (+) 597 WP_014637682.1 recombination mediator RecR Machinery gene
  SSUD12_RS03140 (SSUD12_0601) - 611155..612201 (+) 1047 WP_014637683.1 D-alanine--D-alanine ligase -
  SSUD12_RS03145 (SSUD12_0602) - 612289..612669 (+) 381 WP_014637684.1 OsmC family protein -
  SSUD12_RS03150 (SSUD12_0603) - 612670..613746 (+) 1077 WP_014637685.1 ABC transporter permease -
  SSUD12_RS03155 (SSUD12_0604) - 613756..614424 (+) 669 WP_014637686.1 ABC transporter ATP-binding protein -
  SSUD12_RS03160 (SSUD12_0605) - 614583..615944 (+) 1362 WP_014637687.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=40862 SSUD12_RS03135 WP_014637682.1 610454..611050(+) (recR) [Streptococcus suis D12]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSICGNLTDQDPCGICQDTSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=40862 SSUD12_RS03135 WP_014637682.1 610454..611050(+) (recR) [Streptococcus suis D12]
ATGCTCTATCCAACTCCCATAGCTAAATTAATTGACAGTTATTCAAAACTACCAGGAATCGGTATTAAAACAGCTACGCG
TCTAGCCTTTTATACCATTGGTATGGAAGATGATGTAGTCAACGAATTTGCTAAAAATCTCCTGGCGGCTAAGAGAGATT
TGACCTATTGTTCCATTTGCGGCAATTTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATACCAGCCGTGACCAGTCG
ACCATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATCCAAGAATACCACGGTCTTTACCATGTCTT
GCATGGCTTGATTTCCCCGATGAATGGCATTGGACCAGACGATATTAACTTAAAGACCTTGTTAACTCGTCTAATGGAAA
ATGAAGTGACAGAAGTCATTGTAGCGACAAATGCAACAGCAGATGGTGAAGCGACATCCATGTACATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA96ZYK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495