Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY16_RS03370 Genome accession   NZ_CP046832
Coordinates   688077..688694 (-) Length   205 a.a.
NCBI ID   WP_011079558.1    Uniprot ID   Q7MHU7
Organism   Vibrio vulnificus strain 06-2410     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 683077..693694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS03360 aceF 684368..686260 (+) 1893 WP_158104986.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPY16_RS03365 lpdA 686518..687945 (+) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  GPY16_RS03370 opaR 688077..688694 (-) 618 WP_011079558.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPY16_RS03375 hpt 689086..689616 (+) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  GPY16_RS03380 can 689715..690383 (-) 669 WP_026060803.1 carbonate dehydratase -
  GPY16_RS03385 - 690625..692295 (+) 1671 WP_080526789.1 SulP family inorganic anion transporter -
  GPY16_RS03390 - 692463..693386 (+) 924 WP_017421202.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23717.02 Da        Isoelectric Point: 6.1461

>NTDB_id=408593 GPY16_RS03370 WP_011079558.1 688077..688694(-) (opaR) [Vibrio vulnificus strain 06-2410]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=408593 GPY16_RS03370 WP_011079558.1 688077..688694(-) (opaR) [Vibrio vulnificus strain 06-2410]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGCGGTGGTCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACTCGCGAAGATCTTGTAGACGAAGTGCTTAATCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATCACCAACGCAATGATTGAGCTTGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCAACGCGTGACGAAGTTTGGCCTCTGTTTGTCACCACCAACC
GTACTAATCAGTTGCTGGTACAAAACATGTTCATCAAAGCCATTGAACGCGGTGAAGTGTGTGATCAACACAACCCAGAA
GATTTGGCAAACCTGTTCCACGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGCACCAACAATACTGCAGAGCTGAG
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAACACGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707

Multiple sequence alignment