Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY16_RS03265 Genome accession   NZ_CP046832
Coordinates   665884..666402 (+) Length   172 a.a.
NCBI ID   WP_017421185.1    Uniprot ID   A0A087ID55
Organism   Vibrio vulnificus strain 06-2410     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 660884..671402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS03255 gshA 663625..665190 (+) 1566 WP_158104984.1 glutamate--cysteine ligase -
  GPY16_RS03260 - 665201..665833 (+) 633 WP_086467806.1 hypothetical protein -
  GPY16_RS03265 luxS 665884..666402 (+) 519 WP_017421185.1 S-ribosylhomocysteine lyase Regulator
  GPY16_RS03270 - 666461..667738 (-) 1278 WP_017421186.1 HlyC/CorC family transporter -
  GPY16_RS03275 - 667825..668619 (-) 795 WP_011079539.1 inner membrane protein YpjD -
  GPY16_RS03280 ffh 668833..670209 (+) 1377 WP_011079540.1 signal recognition particle protein -
  GPY16_RS03285 rpsP 670505..670753 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  GPY16_RS03290 rimM 670769..671317 (+) 549 WP_038941427.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19024.86 Da        Isoelectric Point: 5.2451

>NTDB_id=408588 GPY16_RS03265 WP_017421185.1 665884..666402(+) (luxS) [Vibrio vulnificus strain 06-2410]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAVGISVNRNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408588 GPY16_RS03265 WP_017421185.1 665884..666402(+) (luxS) [Vibrio vulnificus strain 06-2410]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTAGAGCACTTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCGGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGCGGTACCGCAGCCATGC
ATTCGCTAGATGAAGCGAAGCAAATTGCTCAAAATATCTTAGCGGTTGGTATTTCAGTCAATAGAAACGATGAGCTAGCA
TTGCCAGAAGCAATGCTAAAAGAGCTCAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087ID55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment