Detailed information NTG0408585

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY16_RS03145
• Genome accession: NZ_CP046832
• Coordinates: 643512..644504 (+)
• Length: 330 a.a.
• NCBI ID: WP_045589572.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 06-2410
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 638512..649504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY16_RS03110	ftsB	638543..638824 (+)	282	WP_017420271.1	cell division protein FtsB	-
GPY16_RS03115	ispD	638824..639537 (+)	714	WP_039548274.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY16_RS03120	ispF	639534..640010 (+)	477	WP_017420273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY16_RS03125	truD	640046..641089 (+)	1044	WP_130198179.1	tRNA pseudouridine(13) synthase TruD	-
GPY16_RS03130	surE	641095..641862 (+)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
GPY16_RS03135	-	641865..642491 (+)	627	WP_158104980.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY16_RS03140	-	642535..643431 (+)	897	WP_199245010.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY16_RS03145	rpoS	643512..644504 (+)	993	WP_045589572.1	RNA polymerase sigma factor RpoS	Regulator
GPY16_RS03150	mutS	644580..647141 (-)	2562	WP_103195753.1	DNA mismatch repair protein MutS	-
GPY16_RS03155	pncC	647225..647728 (+)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
GPY16_RS03160	recA	647861..648910 (+)	1050	WP_038941440.1	recombinase RecA	Machinery gene
GPY16_RS03165	recX	649020..649481 (+)	462	WP_038964353.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38025.10 Da
• Isoelectric Point: 4.4791

>NTDB_id=408585 GPY16_RS03145 WP_045589572.1 643512..644504(+) (rpoS) [Vibrio vulnificus strain 06-2410]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=408585 GPY16_RS03145 WP_045589572.1 643512..644504(+) (rpoS) [Vibrio vulnificus strain 06-2410]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGCTTGATTCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATTTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGAGGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.306	100	0.83