Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY55_RS11055 Genome accession   NZ_CP046831
Coordinates   390822..391436 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 385822..396436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS11045 aceF 387112..388998 (+) 1887 WP_031847487.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  GPY55_RS11050 lpdA 389267..390694 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  GPY55_RS11055 opaR 390822..391436 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  GPY55_RS11060 hpt 391755..392285 (+) 531 WP_029826941.1 hypoxanthine phosphoribosyltransferase -
  GPY55_RS11065 can 392359..393027 (-) 669 WP_005462578.1 carbonate dehydratase -
  GPY55_RS11070 - 393311..394981 (+) 1671 WP_083135489.1 SulP family inorganic anion transporter -
  GPY55_RS11080 - 395233..396150 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=408547 GPY55_RS11055 WP_005479697.1 390822..391436(-) (opaR) [Vibrio parahaemolyticus strain 2012AW-0224]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=408547 GPY55_RS11055 WP_005479697.1 390822..391436(-) (opaR) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAACCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment