Detailed information NTG0408454

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPY13_RS06380
• Genome accession: NZ_CP046823
• Coordinates: 1361443..1362867 (-)
• Length: 474 a.a.
• NCBI ID: WP_001183678.1
• Uniprot ID: -
• Organism: Vibrio mimicus strain 06-2455
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1356443..1367867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY13_RS06355	purT	1356966..1358141 (-)	1176	WP_000468087.1	phosphoribosylglycinamide formyltransferase 2	-
GPY13_RS06360	-	1358296..1359170 (-)	875	Protein_1186	AEC family transporter	-
GPY13_RS06365	cdd	1359318..1360205 (-)	888	WP_001246051.1	cytidine deaminase	-
GPY13_RS06370	-	1360374..1361048 (-)	675	WP_000266248.1	LrgB family protein	-
GPY13_RS06375	-	1361039..1361413 (-)	375	WP_032468633.1	CidA/LrgA family protein	-
GPY13_RS06380	sbcB	1361443..1362867 (-)	1425	WP_001183678.1	exodeoxyribonuclease I	Machinery gene
GPY13_RS06385	-	1363015..1364388 (-)	1374	WP_000117939.1	L-cystine transporter	-
GPY13_RS06390	msrB	1364702..1365151 (+)	450	WP_000935878.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPY13_RS06395	cobT	1365594..1366619 (+)	1026	WP_000887096.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPY13_RS06400	-	1366619..1367404 (+)	786	WP_000718976.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54738.01 Da
• Isoelectric Point: 5.7734

>NTDB_id=408454 GPY13_RS06380 WP_001183678.1 1361443..1362867(-) (sbcB) [Vibrio mimicus strain 06-2455]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSLGLSEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVIRACHALRPEGIEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAE
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKENNVDSQLYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLAH

Nucleotide

• Length: 1425 bp

>NTDB_id=408454 GPY13_RS06380 WP_001183678.1 1361443..1362867(-) (sbcB) [Vibrio mimicus strain 06-2455]
ATGCAGCAAGAACACCAGCCAACATTTTTCTTCTTTGACTACGAGACTTGGGGAGTGAATCCCGCGAAGGATCGCCCTAG
TCAGTTTGCGGGTGTTCGTACCGATATGGATTTCAACATCATTGGTGAGCCGCTGGTGATTTACTGCCAATTACCAAATG
ATTATTTACCCGCTCCTGAAGCGGCGCTGATCACCGGAATTACTCCACAGAAAGCGAATAGTTTAGGCTTATCAGAGCCA
GAATTTATCGCCCGCATTCATGCTGAACTCTCCACGCCAAACACCACCAGCTTAGGCTACAACAGCATTCGTTTTGACGA
TGAAGTGACACGCTACACCTGCTATCGCAACTTTATCGACCCGTATGCATGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGATTCGTGCTTGCCATGCTTTGCGCCCTGAAGGCATCGAATGGCCAGAGAATGATGAAGGCTTTACT
AGCTTTAAGTTAGAACACCTTTCTGTCGCCAACGGCATTGAACACAGTAACGCACACGATGCAATGGCTGACGTGATTGC
TACCATTGAATTGGCGAAAAAGATCAAAGCCGCGCAGCCTAAGTTGTTCGATTATTTCTTCAACATGCGCCACAAACGCA
AGCTGACTGAGCTGATTGATATCGTTAACCAAACCCCGCTGATGCATGTTTCCGGTATGCTTGGCCGCGAACGTCAGTAC
ACCAGTTGGATTGTGCCGATTGCTTGGCATCCTACCAACCAAAATGCGGTCATTGTGGTTGATTTGGGTAAAGACCCTCA
GCCTCTGTTTGATCTTGATGCAGAAGCGTTGCAAGCACGTCTCTATACTCGTTATGAAGATTTAGCGCCCGATGAACTGC
CCGTTCCGGTGAAGTTAGTGCATCTCAACAAATGCCCTATTCTTGCTCCCGCCAAGACTCTGACCGCAGAGAATGCTGAA
AAGATTGGTATTGATCGCGAGCAGTGTCTTGCTCACTTAAATGTGATTCGTCAGCATCCAGAAATTCGTGAAAAGCTGGT
GACGGTATTCAGTCAAGAGCGCGAGTTTGCCAAAGAAAACAATGTGGATAGCCAATTGTATGAAGGGTTCTTCTCGCCTG
CCGATCGTGCGGCGATGGAGATCATTCGCACCACATCACCGGATAATCTTGGCAGCTTAGACATCCAAGTGGCGGATAAA
CGTATCGAACCTCTGTTGTTCCGTTACCGCGCTCGCCATTACCCACATACCTTAACCGATGCCGAGCAGCGCCGCTGGGC
AGCGCATTGTCGTGACTATTTTGAACGTAACCTTGAAAGCTATATGTTGAATTTGGAAAACTTAGTTCATGAACATCAGA
CTGACGAAAAGAAAATGGCGATTTTAAAATCCGTTTACCATTACGTTGAAAAGCTCGCTCACTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	94.503	99.789	0.943