Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY13_RS05215 Genome accession   NZ_CP046823
Coordinates   1117493..1118863 (+) Length   456 a.a.
NCBI ID   WP_158121141.1    Uniprot ID   -
Organism   Vibrio mimicus strain 06-2455     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112493..1123863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS05200 - 1113522..1114358 (+) 837 WP_000365336.1 LysR family transcriptional regulator -
  GPY13_RS05210 uvrB 1115155..1117185 (+) 2031 WP_000029993.1 excinuclease ABC subunit UvrB -
  GPY13_RS05215 luxO 1117493..1118863 (+) 1371 WP_158121141.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY13_RS05220 luxU 1118867..1119208 (+) 342 WP_001209533.1 quorum-sensing phosphorelay protein LuxU -
  GPY13_RS05225 - 1119191..1120087 (-) 897 WP_000061080.1 YvcK family protein -
  GPY13_RS05230 moaA 1120394..1121383 (+) 990 WP_000068558.1 GTP 3',8-cyclase MoaA -
  GPY13_RS05235 moaB 1121444..1121956 (+) 513 WP_000509707.1 molybdenum cofactor biosynthesis protein B -
  GPY13_RS05240 moaC 1121967..1122446 (+) 480 WP_000080913.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY13_RS05245 moaD 1122443..1122688 (+) 246 WP_000598593.1 molybdopterin synthase sulfur carrier subunit -
  GPY13_RS05250 moaE 1122690..1123154 (+) 465 WP_000370419.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50907.20 Da        Isoelectric Point: 5.7411

>NTDB_id=408451 GPY13_RS05215 WP_158121141.1 1117493..1118863(+) (luxO) [Vibrio mimicus strain 06-2455]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLHAVKQKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTANNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFIRLSAEVVERFRHYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMPEPVNRALPLANENKVVSVH
EIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQAWNEKVKEKEKER

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=408451 GPY13_RS05215 WP_158121141.1 1117493..1118863(+) (luxO) [Vibrio mimicus strain 06-2455]
ATGGTAGAAGATACGGCGTCGGTTGCGGCTCTGTATCGTTCTTATCTCACCCCACTGGATATTGATATCAATATCGTCGG
AACTGGACGCGATGCCATTGAAAGTATTGGCCGCCGCGAACCTGATTTGATCCTGCTTGATCTACGTTTGCCTGATATGA
CGGGTATGGACGTGTTACACGCAGTAAAACAAAAATCGCCCGATGTTCCCATCGTGTTTATGACCGCACATGGCTCGATT
GATACAGCGGTTGAAGCGATGCGCCACGGCGCTCAAGACTTTTTGATTAAGCCTTGTGAAGCGGATCGTCTACGCGTAAC
AGCGAATAACGCGATTCGTAAAGCGTCGAAACTCAAAAACGACGTTGATAATAAAAATCAAAATTACCAAGGCTTTATCG
GCAGCAGCCAAACCATGCAAGCCGTATATCGCACTATCGATTCTGCGGCGAGCAGTAAAGCCAGTATCTTCATTACCGGC
GAAAGTGGTACAGGTAAAGAGGTGTGTGCCGAAGCGATTCATGCTGCGAGTAAACGAGGCGATAAACCGTTTATTGCAAT
TAACTGTGCAGCCATTCCTAAAGATCTGATCGAAAGTGAGCTATTTGGCCACGTAAAAGGGGCTTTTACGGGAGCGGCGA
CTGAACGCCAAGGGGCTGCTGAAGCTGCTGATGGTGGCACACTGTTTTTGGATGAGCTTTGCGAAATGGATTTGGATTTA
CAGACCAAACTACTGCGCTTCATCCAAACAGGGACTTTCCAAAAGGTTGGTTCTTCAAAAATGAAAAGCGTGGATGTGCG
CTTTGTTTGTGCAACCAACCGTGACCCATGGAAAGAAGTGCAAGAAGGCCGTTTTCGTGAAGACTTGTATTACCGTTTAT
ATGTGATCCCTCTGCATTTACCGCCATTGCGCGCGCGCGGTGATGATGTGATTGAAATTGCCTATTCGCTGCTTGGCTTT
ATGTCCAAAGAAGAAGGTAAGGACTTCATACGTTTGTCGGCAGAAGTGGTCGAACGCTTCCGTCACTATGAGTGGCCGGG
TAACGTGCGCCAACTGCAAAACGTATTGCGTAACGTTGTGGTGTTGAATGAAGGGCGTGAAATTACTTTGGATATGTTGC
CCCCGCCGCTTAACCAAATGCCGGAGCCAGTTAATCGAGCGTTGCCTCTCGCGAATGAAAATAAAGTCGTGTCGGTGCAT
GAAATTTTCCCGTTGTGGATGACGGAAAAGCAAGCCATAGAACAAGCTATTGAAGCTTGTGATGGCAATATTCCTCGTGC
GGCGACGTATTTGGATGTCAGCCCATCGACGATTTACCGCAAGCTTCAAGCTTGGAATGAGAAAGTCAAAGAAAAAGAGA
AGGAGCGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

97.588

100

0.976
  pilR Pseudomonas aeruginosa PAK

37.885

99.561

0.377

Multiple sequence alignment