Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   GPY13_RS03090 Genome accession   NZ_CP046823
Coordinates   630799..631410 (-) Length   203 a.a.
NCBI ID   WP_000340102.1    Uniprot ID   -
Organism   Vibrio mimicus strain 06-2455     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 625799..636410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS03060 sspB 625877..626350 (+) 474 WP_000351081.1 ClpXP protease specificity-enhancing factor -
  GPY13_RS03065 - 626419..626988 (-) 570 WP_000836324.1 BON domain-containing protein -
  GPY13_RS03070 - 626991..627581 (-) 591 WP_000887295.1 phosphoheptose isomerase -
  GPY13_RS03075 - 627585..627953 (-) 369 WP_080553783.1 YraN family protein -
  GPY13_RS03080 - 627940..629745 (-) 1806 WP_001015472.1 penicillin-binding protein activator -
  GPY13_RS03085 rsmI 629815..630681 (+) 867 WP_000131534.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GPY13_RS03090 hapR 630799..631410 (-) 612 WP_000340102.1 quorum-sensing master transcriptional regulator HapR Regulator
  GPY13_RS03095 hpt 631704..632237 (+) 534 WP_000683347.1 hypoxanthine phosphoribosyltransferase -
  GPY13_RS03100 can 632331..632999 (-) 669 WP_001114113.1 carbonate dehydratase -
  GPY13_RS03105 - 633148..634800 (+) 1653 WP_000484921.1 SulP family inorganic anion transporter -
  GPY13_RS03110 - 634991..635907 (+) 917 Protein_554 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23619.27 Da        Isoelectric Point: 6.3371

>NTDB_id=408447 GPY13_RS03090 WP_000340102.1 630799..631410(-) (hapR) [Vibrio mimicus strain 06-2455]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLEAKSNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=408447 GPY13_RS03090 WP_000340102.1 630799..631410(-) (hapR) [Vibrio mimicus strain 06-2455]
ATGGACGCATCAATCGAAAAACGCCCTCGGACTCGGCTATCTCCACAAAAACGTAAACTACAACTGATGGAAATCGCATT
AGAAGTGTTTGCAACTCGCGGCATTGGCCGCGGCGGTCATGCCGACATCGCTGAAATTGCGCAAGTTTCAGTAGCGACAG
TATTTAACTACTTCCCAACTCGTGAAGATCTGGTCGACGACGTACTGAACTTTGTAGTTCGTCAGTATTCCAACTTCCTC
ACTGATCACATCGATCTAGATTTAGAAGCTAAAAGCAACCTACAAACACTGTGCAAAGAAATGGTGAAACTCGCCATGAC
TGACTGCCACTGGCTAAAAGTATGGTTTGAATGGAGTGCTTCGACTCGTGATGAAGTTTGGCCGTTGTTTGTTTCGACCA
ACCGCACCAACCAGTTACTGATCAAAAATATGTTCATCAAAGCGATGGAGCGTGGTGAATTGTGTGAGAAACACGATGTA
GACAATATGGCGAGCCTGTTCCACGGCATCTTCTACTCTATATTCCTACAAGTAAATCGTTTGGGCGAGCAGGAAGCAGT
GTATAAGTTAGTCGATAGCTATCTCAACATGCTGTGTATCTACAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.737

97.537

0.719

Multiple sequence alignment