Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPX85_RS15820 Genome accession   NZ_CP046822
Coordinates   2625767..2626396 (+) Length   209 a.a.
NCBI ID   WP_110167828.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620767..2631396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS15790 panC 2621139..2622020 (+) 882 WP_154170174.1 pantoate--beta-alanine ligase -
  GPX85_RS15795 - 2622147..2622917 (-) 771 WP_004394238.1 ABC transporter permease -
  GPX85_RS15800 - 2622917..2623840 (-) 924 WP_154170172.1 ABC transporter ATP-binding protein -
  GPX85_RS15805 can 2624104..2624772 (+) 669 WP_004394240.1 carbonate dehydratase -
  GPX85_RS15810 hpt 2624850..2625380 (-) 531 WP_158138876.1 hypoxanthine phosphoribosyltransferase -
  GPX85_RS15815 - 2625529..2625675 (-) 147 WP_158138877.1 hypothetical protein -
  GPX85_RS15820 opaR 2625767..2626396 (+) 630 WP_110167828.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPX85_RS15825 lpdA 2626501..2627928 (-) 1428 WP_004394244.1 dihydrolipoyl dehydrogenase -
  GPX85_RS15830 aceF 2628195..2630081 (-) 1887 WP_158138878.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23977.41 Da        Isoelectric Point: 6.6008

>NTDB_id=408422 GPX85_RS15820 WP_110167828.1 2625767..2626396(+) (opaR) [Vibrio metschnikovii strain 07-2421]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVREFSNFL
TDHIDLDLHAKQNMHNIASGMVSLAIDDCHWLKVWFEWSASTRDEVWPLFMSSNRTNQLLVKNVFSKAIERSEVCSKHNP
EDLATLFHGICYSLFVQANRARDEADMQKLVNNYLNMLCIYQGDRAVAI

Nucleotide


Download         Length: 630 bp        

>NTDB_id=408422 GPX85_RS15820 WP_110167828.1 2625767..2626396(+) (opaR) [Vibrio metschnikovii strain 07-2421]
ATGGACGCATCTATTGAGAAACGCCCTAGAACAAGGCTATCTCCACAAAAACGTAAACAGCAGCTCATGGAAATCGCGCT
GGAAGTCTTCGCAAAACGAGGTATTGGTCGTGGCGGCCATGCTGACATTGCTGAGATTGCTCAGGTCTCAGTAGCAACGG
TATTCAATTACTTCCCGACTCGTGAAGATCTCGTCGACGATGTTCTCACTTTTGTAGTACGTGAGTTCTCTAATTTCTTA
ACTGACCATATCGATCTCGATTTGCATGCAAAGCAAAATATGCACAATATCGCGTCGGGTATGGTGAGTTTGGCTATCGA
CGATTGTCACTGGTTAAAAGTGTGGTTTGAGTGGAGCGCCTCTACGCGTGATGAAGTATGGCCACTCTTTATGTCGAGTA
ATCGTACCAATCAACTGCTAGTGAAAAATGTCTTTTCAAAAGCGATTGAGCGCTCAGAAGTATGTAGCAAACATAACCCT
GAAGATCTTGCTACCCTGTTTCACGGCATCTGCTACTCGCTGTTCGTTCAAGCCAATCGAGCGCGTGATGAGGCCGATAT
GCAGAAACTGGTTAATAACTATTTAAATATGCTCTGTATCTATCAAGGCGATCGCGCAGTAGCTATCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

77.778

94.737

0.737
  hapR Vibrio cholerae C6706

75.743

96.651

0.732
  hapR Vibrio cholerae strain A1552

75.743

96.651

0.732

Multiple sequence alignment