Detailed information NTG0408421

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPX85_RS15595
• Genome accession: NZ_CP046822
• Coordinates: 2568529..2571867 (+)
• Length: 1112 a.a.
• NCBI ID: WP_158139064.1
• Uniprot ID: -
• Organism: Vibrio metschnikovii strain 07-2421
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2563529..2576867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX85_RS15580	hemL	2564366..2565658 (+)	1293	WP_154170226.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPX85_RS15585	-	2566100..2567185 (+)	1086	WP_158138856.1	AI-2E family transporter	-
GPX85_RS15590	rsmC	2567251..2568273 (+)	1023	WP_158138857.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPX85_RS15595	chiS	2568529..2571867 (+)	3339	WP_158139064.1	response regulator	Regulator
GPX85_RS15600	-	2572616..2574286 (+)	1671	WP_004394189.1	ABC transporter substrate-binding protein	-
GPX85_RS15605	-	2574507..2575493 (+)	987	WP_004394190.1	ABC transporter permease	-
GPX85_RS15610	-	2575496..2576521 (+)	1026	WP_154170222.1	ABC transporter permease	-

Sequence

Protein

• Length: 1112 a.a.
• Molecular weight: 125813.18 Da
• Isoelectric Point: 6.4892

>NTDB_id=408421 GPX85_RS15595 WP_158139064.1 2568529..2571867(+) (chiS) [Vibrio metschnikovii strain 07-2421]
MLAFLAVSLTPLTVTALFFLHSHSKDLQEQSTSHLISVRDTKQQQIIDYLSAKESEVMGFVRSELAYASGGRFYGLVNAF
QRLGENIEQARLHAQQRYIPGSGDQIRTSILPKSSSYAGSERYRLLHKRYHASYLELLKRSDFDDILIVDLQGNVVYSIF
KHAYYGTNLLSDNPQNSPLGRTFQQLEQQVTEQRKVNEDYTPVIVSDFAEYNGRQYAWMGAPIIQQGYLHSYAMFRLPNN
GITKLIADHNQDSAKRTLLVGQDHRSRTLAYQQADVDTSSEVIQLALNGSRSVTTYENTLGEKQIAAYAPIHLQNLNWAL
VVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITLPLLKLTWAAERVSAGDLDQPIIHTQRRDEIGRLAVS
FERMQRSIREKIQLIKSQNIELEDNIQLIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALTSGANGPISAAH
RYQLDIIISSGQRLANLVDDLLDYHKMRYGHLDIETQAVNLSNATRMVLELSHHLLGKKTLRIINQIADQPLWVSADAQR
LEQVLYNLIGNAIKYTSEGKIVISATPMEHQVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDSSRYRQGAGLGLTISRQLI
ELMQGSLYVSSQPMVGTTFSFTLPLATSQQIAQAQRSQIAHFQAPELSSIDDLTQPQQPENPQGPLLLIADDEPVNLRVL
DSFLRLEGYRVRTALDGHEVIEAIAKEKPELLLLDVMMPGMSGYQVCEQLREQYDHAQLPIIMLTALTQSDDRIRGFAAG
ANDYLSKPFNKQELAARIKAHLSASKAEQRRIENAQLQKELKQRAMVEASLLETQGRLLEQLDSAPEAILCLREDNKIRF
ANEAACKLFKRSQDQLKRSNAEELIAPKYLLVEQEHYCGNIDIYIDDVRQHLSADVLRLPEGSSFKTMYIFNVGGNLNAN
RIHQLETAVDALSSYAFAGDKDKLQQLKELGGEFTRIAEKVAGETPSKQALMRAVLVDAMTSALDYWEKVTGQSKFTFAE
QSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCQEQGPERTYIEVQRDKLQQLLTSD

Nucleotide

• Length: 3339 bp

>NTDB_id=408421 GPX85_RS15595 WP_158139064.1 2568529..2571867(+) (chiS) [Vibrio metschnikovii strain 07-2421]
ATGTTAGCGTTTCTGGCAGTCAGCCTCACTCCGCTAACGGTAACAGCCTTGTTCTTTCTTCATTCACACAGTAAAGACTT
ACAAGAACAAAGTACCTCACATCTCATTTCTGTACGAGATACCAAGCAGCAACAAATTATCGATTATCTCAGCGCCAAAG
AGTCTGAAGTGATGGGATTTGTTCGTTCAGAACTTGCCTATGCCAGCGGTGGACGTTTTTACGGTTTGGTTAATGCCTTT
CAACGATTAGGGGAAAATATTGAGCAAGCGCGTCTGCACGCTCAACAACGCTATATCCCCGGTTCTGGCGATCAAATCAG
AACCTCTATTTTACCTAAATCAAGTAGTTACGCAGGTAGTGAACGTTATCGTCTACTGCACAAACGTTACCATGCAAGTT
ATCTAGAGCTACTGAAACGGTCTGACTTTGACGATATTCTGATCGTCGATCTACAGGGTAATGTGGTCTATTCAATTTTC
AAGCATGCGTATTATGGCACGAATCTACTCAGCGATAATCCGCAGAACTCACCTCTCGGACGAACCTTCCAACAACTGGA
ACAGCAAGTGACTGAGCAACGTAAGGTCAATGAAGACTATACCCCTGTCATTGTGTCTGATTTTGCTGAATACAATGGAC
GCCAATATGCTTGGATGGGCGCCCCAATTATTCAACAAGGCTATCTTCACAGTTATGCCATGTTCCGTCTGCCGAATAAT
GGCATCACCAAATTAATTGCCGATCATAATCAAGACTCAGCCAAAAGGACGTTATTGGTTGGCCAAGATCACCGTTCTCG
TACGCTGGCTTATCAACAAGCCGATGTGGATACCAGCAGTGAAGTGATTCAGTTGGCACTCAATGGCTCGCGCTCGGTCA
CAACCTATGAGAATACGCTCGGTGAAAAACAGATTGCCGCTTATGCGCCGATTCATTTGCAAAATCTCAATTGGGCTTTA
GTTGTCGAACTCCCTGAAAAAGAAGCCTTTGCCCGAGTAAGACAACTGGAAAAATTATTTATTTTCGCGATGTTAACGGC
GATCATCTTAGTAGTCATCGCTTCTCACTATCTCTCTAACTTTATTACTCTCCCTTTACTCAAACTCACTTGGGCAGCAG
AACGCGTCTCCGCCGGTGATTTGGATCAACCGATCATTCATACTCAACGGCGTGATGAAATTGGCCGTTTGGCGGTTAGT
TTTGAAAGAATGCAACGCTCGATCCGTGAAAAAATCCAACTGATCAAATCACAAAATATTGAGTTAGAAGATAATATCCA
GCTGATTCGTAAACAAAATGATGAACTGCAATTAGCCAACAAACTTAAAGATGAGTTTTTAGCGACCACATCACATGAGC
TACGTACTCCATTACACGGCATGATAGGCATTGCCGAAGCTTTGACTTCCGGTGCGAATGGGCCAATCAGCGCAGCCCAC
CGCTATCAACTCGACATTATTATCAGTAGCGGTCAACGTCTTGCCAATCTTGTTGATGATTTACTCGATTATCACAAGAT
GCGTTATGGTCATCTCGATATCGAAACTCAAGCCGTTAATCTCTCCAATGCGACCAGAATGGTACTTGAGCTGTCTCACC
ATTTACTGGGTAAAAAAACGCTACGAATTATTAACCAAATTGCCGATCAGCCATTATGGGTATCGGCTGATGCTCAGCGA
CTTGAACAGGTACTGTATAACCTGATTGGTAATGCGATTAAATATACCTCTGAAGGAAAAATTGTTATTTCAGCTACCCC
AATGGAGCATCAAGTTAGAGTCCAAGTGGTCGATACTGGACAAGGCATTCCTGCTGAGCAATTAGAGCATATTTTTGAAC
CGCTCATTCAAGCCGGGCACGATAGCAGTCGTTATCGTCAAGGTGCGGGTTTAGGATTGACGATTAGCCGCCAATTAATT
GAATTAATGCAAGGCTCCTTGTACGTCAGTAGCCAGCCGATGGTCGGCACCACCTTTAGTTTTACGCTGCCACTCGCGAC
TTCACAACAAATTGCTCAAGCGCAGCGCAGTCAAATTGCTCATTTTCAAGCACCGGAATTATCCTCGATTGACGATCTCA
CTCAACCGCAACAACCAGAAAACCCACAAGGTCCTCTACTGCTGATTGCCGATGATGAGCCGGTTAACCTGCGTGTATTA
GACAGTTTTTTACGTCTAGAGGGCTATCGTGTCCGAACAGCACTTGATGGCCATGAGGTTATTGAAGCAATTGCCAAAGA
GAAACCTGAACTGTTACTGCTCGATGTGATGATGCCCGGCATGAGTGGTTATCAGGTCTGTGAGCAATTAAGAGAGCAGT
ACGATCATGCGCAACTACCTATTATAATGCTAACCGCATTAACCCAAAGTGATGATCGGATCAGAGGCTTTGCCGCTGGC
GCCAATGACTATTTATCAAAACCTTTTAATAAACAAGAACTCGCCGCTCGAATTAAAGCTCACTTAAGCGCCAGTAAAGC
AGAGCAACGCCGTATTGAAAATGCTCAACTTCAAAAAGAGCTCAAACAACGAGCGATGGTCGAAGCCAGTTTACTCGAAA
CTCAAGGCCGACTATTAGAGCAACTGGATTCAGCGCCAGAAGCGATTTTGTGTTTACGAGAAGACAATAAAATCCGCTTT
GCCAATGAGGCGGCCTGTAAGCTATTTAAACGCAGCCAAGATCAACTCAAACGCTCTAACGCCGAAGAGTTGATTGCCCC
TAAATATTTACTGGTTGAGCAAGAGCATTATTGCGGGAACATCGATATTTATATCGATGATGTCAGACAACACCTCTCCG
CTGATGTGCTTCGCTTACCGGAAGGAAGCAGTTTTAAAACGATGTACATTTTTAATGTCGGTGGAAATCTTAACGCCAAT
CGTATCCATCAACTGGAAACCGCCGTCGACGCGTTATCAAGCTATGCTTTTGCTGGTGATAAAGACAAACTTCAGCAGTT
AAAAGAGCTAGGAGGTGAATTTACTCGCATCGCAGAAAAAGTGGCCGGAGAAACCCCATCAAAACAGGCGTTAATGCGCG
CCGTGTTGGTTGATGCGATGACGAGCGCTCTCGACTACTGGGAAAAAGTCACAGGACAAAGTAAGTTTACTTTTGCTGAA
CAAAGTGGATTATGGCGCGTCTATTTAGATCGTAGTACTTTGCAAACTCGAACGTTGGATAAGTACTTACGTATTGAAAC
GCTACCCAAAACGCCTCGCTGGCGCACGGTGCTGAACTCTCTTGACTACATATTGGAACACTGTCAGGAGCAAGGCCCAG
AGCGAACCTACATCGAAGTACAACGAGATAAATTACAGCAATTGTTAACGAGCGATTAA

Domains

Predicted by InterproScan.

• PAS fold (PAS) (860-908)

• His Kinase A (phospho-acceptor) domain (HisKA) (443-508)

• Response regulator receiver domain (Response_reg) (708-819)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (557-666)

• HAMP domain (HAMP) (358-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	80.396	100	0.804