Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPX85_RS07360 Genome accession   NZ_CP046822
Coordinates   770228..771205 (+) Length   325 a.a.
NCBI ID   WP_154169163.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 765228..776205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS07330 ispD 765479..766129 (+) 651 WP_233268205.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPX85_RS07335 ispF 766126..766602 (+) 477 WP_004396002.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPX85_RS07340 truD 766764..767809 (+) 1046 Protein_625 tRNA pseudouridine(13) synthase TruD -
  GPX85_RS07345 surE 767802..768557 (+) 756 WP_154169165.1 5'/3'-nucleotidase SurE -
  GPX85_RS07350 - 768561..769187 (+) 627 WP_004395999.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPX85_RS07355 nlpD 769187..770155 (+) 969 WP_158137827.1 murein hydrolase activator NlpD -
  GPX85_RS07360 rpoS 770228..771205 (+) 978 WP_154169163.1 RNA polymerase sigma factor RpoS Regulator
  GPX85_RS07365 mutS 771268..773850 (-) 2583 WP_158137829.1 DNA mismatch repair protein MutS -
  GPX85_RS07370 cysM 774012..774902 (-) 891 WP_158137831.1 cysteine synthase CysM -
  GPX85_RS07375 cysP 775163..776164 (+) 1002 WP_154169161.1 thiosulfate ABC transporter substrate-binding protein CysP -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 37251.13 Da        Isoelectric Point: 4.5900

>NTDB_id=408406 GPX85_RS07360 WP_154169163.1 770228..771205(+) (rpoS) [Vibrio metschnikovii strain 07-2421]
MSISNSVTKVEDFDFDPEVISAAESDVEQLSAINLKEEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQRLDHEPTAEEIAAELDKPVEDVNKMLRLNERISSVDTPIGGDGDKALLDILPDSNHSDPEVS
TQDEDIRLSLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEALFN
VDNDN

Nucleotide


Download         Length: 978 bp        

>NTDB_id=408406 GPX85_RS07360 WP_154169163.1 770228..771205(+) (rpoS) [Vibrio metschnikovii strain 07-2421]
ATGAGTATCAGCAATTCAGTCACTAAAGTCGAAGATTTTGATTTTGACCCTGAAGTTATCAGCGCAGCGGAGTCTGACGT
TGAGCAACTATCCGCCATTAACCTCAAAGAAGAATACGATGCATCGAGTAAAAGCTTAGATGCAACACAGATGTATTTGA
GTGAAATTGGTTTTTCACCCCTTTTAACTGCCGAAGAAGAAGTCCTTTACGCTCGACGTGCATTACGTGGCGATGAGGCT
GCGCGCAAGCGAATGATTGAAAGTAACCTACGCTTGGTGGTGAAAATCTCTCGCCGTTACAGTAACCGTGGTCTAGCGTT
GCTCGATTTGATTGAAGAAGGCAACCTAGGCTTGATCCGAGCCGTTGAAAAATTTGATCCAGAACGAGGTTTTCGTTTTT
CGACTTATGCCACGTGGTGGATTCGTCAAACCATCGAACGGGCGCTGATGAATCAAACTCGTACCATTCGTCTACCGATT
CATGTCGTCAAAGAGCTCAATATCTATTTGCGCACAGCACGTGAACTTTCACAGCGTTTGGACCATGAACCTACGGCAGA
AGAAATTGCCGCTGAGCTGGACAAGCCAGTTGAAGATGTCAATAAAATGCTACGTTTGAATGAGCGGATCAGTTCTGTTG
ATACTCCGATTGGTGGCGATGGCGATAAAGCATTGTTGGATATTCTGCCAGACTCTAATCACTCTGATCCGGAAGTATCG
ACTCAAGATGAAGATATCCGCTTATCCTTGCTTAATTGGCTCGATGAGCTCAATCCAAAGCAAAAAGAAGTCTTAGCGCG
CCGTTTTGGATTACTGGGTTATGAACCTTCAACGCTGGAAGAAGTTGGGCGAGAAATTAATCTTACCCGTGAGCGAGTCA
GACAGATCCAAGTAGAAGGCTTACGTCGCCTACGCGAGATCCTCGTTAAACAAGGGCTGAATATGGAAGCGTTGTTTAAT
GTCGATAACGACAATTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(165-238)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(47-80)

Sigma-70, region 4 (Sigma70_r4)

(253-306)

Sigma-70 region 2 (Sigma70_r2)

(85-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

87.164

100

0.898

Multiple sequence alignment