Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPX85_RS02695 Genome accession   NZ_CP046821
Coordinates   627059..628240 (-) Length   393 a.a.
NCBI ID   WP_004396503.1    Uniprot ID   A0A9X0R873
Organism   Vibrio metschnikovii strain 07-2421     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 622059..633240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS02690 cqsS 624832..626880 (+) 2049 WP_158137297.1 hybrid sensor histidine kinase/response regulator Regulator
  GPX85_RS02695 cqsA 627059..628240 (-) 1182 WP_004396503.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX85_RS02700 elbB 628832..629482 (-) 651 WP_158137298.1 isoprenoid biosynthesis glyoxalase ElbB -
  GPX85_RS02705 yjjG 629577..630251 (+) 675 WP_158137438.1 pyrimidine 5'-nucleotidase -
  GPX85_RS02710 rnk 630305..630715 (-) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  GPX85_RS02715 phnR 630956..631675 (+) 720 WP_004396495.1 phosphonate utilization transcriptional regulator PhnR -
  GPX85_RS02720 - 631764..632552 (-) 789 WP_004396493.1 siderophore-interacting protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43622.68 Da        Isoelectric Point: 6.8456

>NTDB_id=408393 GPX85_RS02695 WP_004396503.1 627059..628240(-) (cqsA) [Vibrio metschnikovii strain 07-2421]
MKYGTSKKQLPEFIQQRLDLFINDLIDSNNNGKHLVLGKRPSTNDIILQSNDYLSLSHHPLIKAHLKQAIDDSTDSVFMS
AIFLQDEADKPDLEQQLAQFAQFDTCLLSQSGWNANTALLQTICSADTNVYIDFFAHMSLWEGARYANAHLHPFMHNHCD
HLVKLIKRHGPGLIVVDSIYSTIGTVAPLADLVAIAKQYGCAILVDESHSLGTHGPKGAGLLAELGLSSQVDFMTVSLAK
SFAYRAGAIWANNHVDRCLPFVGYPAIFSSTILPYEVAALSATLSVIQSADERRKQLFRHSEQLRHGLLELGFTIRSQSQ
IIALETGDERNTENVRDFLENNGVFGAVFCRPATAKNKNIIRLSLNSSLKDSDIQKILSVCESAIHNKQLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=408393 GPX85_RS02695 WP_004396503.1 627059..628240(-) (cqsA) [Vibrio metschnikovii strain 07-2421]
ATGAAATATGGCACCTCAAAAAAACAACTACCTGAATTTATTCAACAACGATTAGATTTATTTATTAACGACCTTATTGA
TAGTAATAATAATGGCAAACATTTGGTTCTAGGCAAGCGTCCAAGCACTAATGATATTATTTTACAGAGTAATGATTACC
TTAGTTTATCTCATCATCCGCTCATTAAGGCTCACTTAAAACAAGCCATCGATGATAGTACCGATAGTGTGTTTATGTCG
GCGATCTTTTTACAAGATGAGGCTGATAAACCTGATCTTGAGCAACAGCTTGCCCAATTTGCTCAATTTGATACGTGTCT
ACTTTCGCAGTCTGGCTGGAATGCGAATACCGCACTATTACAAACGATCTGCTCAGCCGATACCAACGTCTATATCGACT
TTTTTGCTCATATGTCACTTTGGGAGGGAGCTCGCTATGCCAATGCTCATCTGCACCCTTTTATGCATAATCACTGTGAT
CATTTAGTGAAGCTCATTAAACGTCATGGACCCGGATTGATCGTGGTCGATTCTATCTATAGTACAATTGGTACTGTCGC
CCCATTAGCAGATTTAGTTGCGATAGCTAAACAGTATGGTTGCGCTATTTTAGTTGATGAGTCCCATTCACTCGGAACTC
ATGGTCCTAAAGGTGCCGGTTTGCTCGCTGAACTTGGTTTATCATCACAGGTTGATTTTATGACGGTGAGTTTAGCGAAA
AGCTTTGCTTATCGAGCTGGCGCTATCTGGGCGAATAACCATGTTGATCGCTGTTTACCTTTTGTCGGTTATCCCGCGAT
CTTTAGCTCGACAATTCTGCCTTATGAAGTCGCAGCGCTCAGTGCTACGTTATCGGTAATCCAATCGGCGGATGAAAGAA
GAAAACAACTTTTTCGTCACAGTGAGCAGTTACGTCATGGCTTACTTGAACTTGGTTTTACGATTCGTAGTCAATCGCAA
ATTATTGCTTTAGAAACAGGCGATGAACGTAATACCGAAAATGTTCGTGATTTTCTAGAGAATAATGGCGTATTTGGCGC
AGTCTTTTGTCGCCCTGCCACGGCAAAAAATAAAAACATTATTCGATTATCGTTAAATAGCTCACTAAAAGACTCTGACA
TTCAAAAAATTCTCTCAGTCTGTGAGTCTGCGATACACAATAAGCAACTCTATTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.814

98.728

0.679

Multiple sequence alignment