Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPX85_RS02690 Genome accession   NZ_CP046821
Coordinates   624832..626880 (+) Length   682 a.a.
NCBI ID   WP_158137297.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 619832..631880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS02680 - 620588..621730 (+) 1143 WP_158137295.1 exonuclease SbcCD subunit D -
  GPX85_RS02685 - 621734..624778 (+) 3045 WP_158137296.1 AAA family ATPase -
  GPX85_RS02690 cqsS 624832..626880 (+) 2049 WP_158137297.1 hybrid sensor histidine kinase/response regulator Regulator
  GPX85_RS02695 cqsA 627059..628240 (-) 1182 WP_004396503.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX85_RS02700 elbB 628832..629482 (-) 651 WP_158137298.1 isoprenoid biosynthesis glyoxalase ElbB -
  GPX85_RS02705 yjjG 629577..630251 (+) 675 WP_158137438.1 pyrimidine 5'-nucleotidase -
  GPX85_RS02710 rnk 630305..630715 (-) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  GPX85_RS02715 phnR 630956..631675 (+) 720 WP_004396495.1 phosphonate utilization transcriptional regulator PhnR -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78690.44 Da        Isoelectric Point: 5.8719

>NTDB_id=408392 GPX85_RS02690 WP_158137297.1 624832..626880(+) (cqsS) [Vibrio metschnikovii strain 07-2421]
MDAVKKIYQYAEPNLTLVGWMGFIGFPIYYYVWTYLFPQGYESFWLRGFCSLLFAGIAFRHSFPKALQRYLPYYYLLSIG
FCLPFFFSFMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLPQAIISVLLAYFSVYVVVDAAPSQMISWTYVPIFIFTY
VFGNLFYFRNQVSHESKASLAKSFGAGIAHEMRNPLSALKSSLDVVRTLVPSPHSGQATHIINQQDLQQLHEILNDADDV
IHSGNETIDLLLTSIDQHRVSTSTFRKLSAATVVENAIHSFAYKRAVDRAAVSLTVNQDFDFFGSDTLLKFALYNLLKNA
FYYQSSEVFTINIELNRVDEQNVITVKDNGIGIEAEQLEEIFKDFYTFGKHNSYGLGLPFCRKVMHSFGGEIICHSVFGE
WTQFTLRFPDVESERIKQIKHDLLKSKSILLIGEPSLLSRHLNEQAFYLGFTLHMLTLSQAMQKEAYEFEFDLIFIDLAP
FETQWDKLSLLEGQLHFTEARISYIYDQSKRYPINISRYLTIYPIEIRHLLKDSIGTIEKLLFSIDELEVERGNIPQREV
NYQRSILLVDDNDSLRTFSAILLEKQGYDVYQAHDGQQALEILKQHTMDLILMDVEMPVIDGLQATNIIRSSMAEYRKTP
IIGYTGDNSSETINRLYRAGMNDYIVKPTDKDKLLNKVADWL

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=408392 GPX85_RS02690 WP_158137297.1 624832..626880(+) (cqsS) [Vibrio metschnikovii strain 07-2421]
ATGGATGCGGTAAAAAAAATATACCAATACGCAGAACCAAACTTAACGTTAGTTGGATGGATGGGCTTCATCGGTTTTCC
GATTTACTATTATGTATGGACTTACCTGTTTCCCCAAGGCTATGAATCGTTTTGGCTACGGGGATTTTGCTCGCTATTGT
TTGCCGGAATTGCTTTTCGCCACTCATTTCCCAAAGCATTACAGCGCTATTTACCGTACTACTATCTGCTTTCAATAGGC
TTTTGTTTACCTTTTTTCTTCTCTTTTATGATGTTGATGAACGATTGGTCGACAGTCTGGGCGATGTCTTTTATGGCATC
GATTTTCTTGCATATTCTGCTAGTTCATGAAACTAAGGTGATGTTGCCACAAGCGATTATTTCCGTATTACTCGCTTACT
TCTCGGTTTATGTTGTCGTTGATGCCGCCCCTAGTCAGATGATTTCTTGGACTTATGTACCTATTTTTATCTTTACTTAT
GTATTCGGTAATCTGTTCTACTTTCGCAATCAGGTATCACACGAGAGCAAAGCATCATTAGCAAAATCGTTTGGTGCAGG
AATTGCACACGAAATGCGTAATCCACTCAGTGCGCTTAAGTCTTCTCTTGATGTGGTGCGTACTCTAGTTCCTTCCCCCC
ATTCAGGCCAAGCAACTCATATTATTAATCAACAAGATTTACAGCAATTGCATGAAATATTAAATGATGCGGATGATGTG
ATTCATTCTGGTAATGAAACCATAGATTTATTGTTAACGTCAATTGATCAGCATCGTGTCTCAACGTCGACCTTTCGAAA
ATTATCCGCTGCTACGGTGGTTGAAAATGCTATTCATTCTTTTGCCTACAAACGGGCCGTCGATCGAGCAGCCGTTTCAT
TAACCGTTAATCAAGATTTTGATTTTTTTGGTAGCGATACCTTACTTAAGTTTGCGTTGTACAATTTACTGAAAAATGCT
TTTTATTATCAAAGTAGTGAAGTGTTTACGATTAACATCGAATTGAATCGAGTCGATGAGCAGAATGTGATTACTGTCAA
AGATAATGGGATTGGTATTGAAGCAGAACAGCTCGAAGAAATTTTTAAGGACTTCTATACCTTTGGTAAACATAATAGTT
ATGGGTTAGGGCTGCCTTTTTGTCGAAAAGTTATGCATTCATTTGGCGGTGAAATTATTTGCCATTCCGTCTTCGGTGAA
TGGACCCAATTTACCCTTCGGTTTCCAGATGTTGAATCCGAACGTATCAAACAGATAAAACACGATCTACTAAAATCTAA
ATCGATTTTATTGATTGGTGAACCGAGTTTATTAAGTCGGCATCTGAATGAACAAGCTTTTTATTTAGGGTTTACTTTGC
ATATGCTCACTCTCAGTCAAGCGATGCAAAAAGAAGCGTATGAATTTGAATTTGATCTTATTTTTATTGATTTAGCTCCA
TTTGAAACACAGTGGGATAAATTGAGCTTACTGGAAGGTCAATTACATTTTACTGAAGCCAGAATTAGTTATATTTATGA
CCAATCTAAGCGTTATCCTATTAATATCTCTCGTTACTTAACAATTTATCCAATTGAAATACGTCATTTGTTAAAAGACA
GTATTGGAACCATCGAGAAGCTATTATTTTCGATTGATGAGCTTGAGGTTGAAAGGGGAAATATCCCACAACGAGAAGTC
AATTATCAAAGAAGCATCTTATTAGTCGATGACAATGATTCTTTACGAACGTTTTCTGCTATATTATTAGAAAAGCAGGG
TTATGATGTTTATCAAGCTCATGATGGTCAACAAGCTTTAGAGATATTAAAACAACATACTATGGATTTAATCTTAATGG
ATGTTGAAATGCCGGTTATTGATGGATTACAGGCGACGAATATCATCCGCAGTTCAATGGCCGAATACCGAAAAACGCCT
ATTATTGGCTATACAGGGGATAATAGCTCAGAAACGATAAATCGTCTCTACCGTGCTGGAATGAATGATTATATTGTTAA
ACCTACTGATAAAGATAAATTATTAAATAAAGTGGCCGATTGGTTATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

57.101

100

0.572

Multiple sequence alignment