Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPY06_RS16830 Genome accession   NZ_CP046820
Coordinates   2398857..2400224 (+) Length   455 a.a.
NCBI ID   WP_158120777.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2393857..2405224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS16810 rsxB 2394460..2395047 (-) 588 WP_158120481.1 electron transport complex subunit RsxB -
  GPY06_RS16815 rsxA 2395047..2395628 (-) 582 WP_055034344.1 electron transport complex subunit RsxA -
  GPY06_RS16825 uvrB 2396510..2398540 (+) 2031 WP_095476516.1 excinuclease ABC subunit UvrB -
  GPY06_RS16830 luxO 2398857..2400224 (+) 1368 WP_158120777.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPY06_RS16835 luxU 2400228..2400569 (+) 342 WP_001209529.1 quorum-sensing phosphorelay protein LuxU -
  GPY06_RS16840 - 2400552..2401448 (-) 897 WP_055034345.1 YvcK family protein -
  GPY06_RS16845 moaA 2401755..2402744 (+) 990 WP_167517910.1 GTP 3',8-cyclase MoaA -
  GPY06_RS16850 moaB 2402804..2403316 (+) 513 WP_000509704.1 molybdenum cofactor biosynthesis protein B -
  GPY06_RS16855 moaC 2403327..2403806 (+) 480 WP_000080922.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPY06_RS16860 moaD 2403803..2404048 (+) 246 WP_055027251.1 molybdopterin synthase sulfur carrier subunit -
  GPY06_RS16865 moaE 2404050..2404511 (+) 462 WP_000350085.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50886.14 Da        Isoelectric Point: 5.5459

>NTDB_id=408383 GPY06_RS16830 WP_158120777.1 2398857..2400224(+) (luxO) [Vibrio metoecus strain 2011V-1015]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESISRREPDLILLDLRLPDMTGMDVLHAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLGL
MSKEEGKDFVRLSAEVVERFRHYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMPTPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQAWNEKVQEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=408383 GPY06_RS16830 WP_158120777.1 2398857..2400224(+) (luxO) [Vibrio metoecus strain 2011V-1015]
ATGGTAGAAGATACAGCGTCGGTGGCGGCGTTGTATCGCTCTTATCTCACCCCGCTGGATATTGATATCAATATCGTCGG
CACAGGGCGCGATGCAATTGAAAGCATCAGTCGCCGTGAGCCGGATCTGATCCTGCTTGATTTACGTTTACCGGATATGA
CGGGGATGGATGTCCTGCATGCAGTAAAAGAAAAATCACCAGATGTACCCATTGTGTTCATGACGGCGCACGGTTCAATT
GATACCGCGGTTGAAGCGATGCGCCATGGTGCTCAAGACTTTTTGATTAAGCCTTGTGAGGCGGATCGCTTGCGGGTCAC
GGTGAATAACGCGATCCGTAAAGCATCGAAACTCAAAAATGATGTCGATAATAAAAATCAGAACTATCAAGGCTTTATAG
GCAGTAGCCAAACCATGCAAGCGGTCTATCGCACAATAGACTCAGCGGCGAGCAGTAAAGCGAGTATTTTCATTACCGGT
GAAAGTGGTACAGGTAAAGAGGTGTGTGCCGAAGCGATTCACGCTGCGAGTAAACGTGGCGATAAGCCGTTTATTGCCAT
TAACTGTGCTGCTATCCCGAAAGATCTGATTGAAAGTGAGTTGTTCGGCCACGTAAAAGGGGCTTTTACCGGTGCGGCGA
CTGAACGCCAAGGTGCTGCGGAAGCCGCTGATGGTGGCACGCTATTTTTGGATGAGTTGTGCGAAATGGATTTGGATTTA
CAAACCAAACTGCTGCGCTTTATCCAAACCGGAACATTCCAAAAAGTTGGCTCATCGAAAATGAAAAGCGTGGATGTGCG
CTTTGTGTGTGCGACCAACCGTGACCCCTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTGAGGACTTGTACTACCGCTTGT
ATGTGATCCCACTGCACTTACCACCATTGCGCGAGCGTGGTGATGATGTGATAGAGATTGCCTACTCGCTGCTTGGCCTT
ATGTCCAAAGAAGAAGGGAAAGATTTTGTACGCTTGTCGGCCGAAGTGGTCGAGCGCTTTCGTCACTACGAGTGGCCGGG
TAACGTGCGTCAATTACAAAACGTTTTACGTAATGTCGTGGTACTGAATGAAGGCCGTGAAATCACGTTAGATATGCTCC
CGCCACCACTAAACCAAATGCCAACTCCGATCAATCGAGCTTTACCGCTCGCCCATGAAAACAAAGTGTCAGTGCATGAA
ATTTTCCCATTGTGGATGACGGAAAAACAGGCCATCGAGCAAGCCATTGAAGCGTGTGATGGTAACATTCCCCGCGCTGC
GACCTATCTGGATGTCAGTCCTTCAACCATTTATCGCAAGCTGCAAGCTTGGAATGAAAAAGTTCAAGAAAAAGAGAAGG
AGCGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

98.022

100

0.98
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment