Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   GPY06_RS14880 Genome accession   NZ_CP046820
Coordinates   1947249..1947860 (-) Length   203 a.a.
NCBI ID   WP_000340092.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942249..1952860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS14850 sspB 1942371..1942835 (+) 465 WP_167517895.1 ClpXP protease specificity-enhancing factor -
  GPY06_RS14855 - 1942909..1943478 (-) 570 WP_000835997.1 BON domain-containing protein -
  GPY06_RS14860 - 1943481..1944071 (-) 591 WP_000887295.1 phosphoheptose isomerase -
  GPY06_RS14865 - 1944075..1944443 (-) 369 WP_000508147.1 YraN family protein -
  GPY06_RS14870 - 1944430..1946235 (-) 1806 WP_055043643.1 penicillin-binding protein activator -
  GPY06_RS14875 rsmI 1946305..1947171 (+) 867 WP_158120318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GPY06_RS14880 hapR 1947249..1947860 (-) 612 WP_000340092.1 quorum-sensing master transcriptional regulator HapR Regulator
  GPY06_RS14885 hpt 1948154..1948687 (+) 534 WP_000683344.1 hypoxanthine phosphoribosyltransferase -
  GPY06_RS14890 can 1948769..1949437 (-) 669 WP_055035086.1 carbonate dehydratase -
  GPY06_RS14895 - 1949584..1951239 (+) 1656 WP_158120319.1 SulP family inorganic anion transporter -
  GPY06_RS14900 - 1951418..1952335 (+) 918 WP_000271058.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23689.36 Da        Isoelectric Point: 6.6352

>NTDB_id=408379 GPY06_RS14880 WP_000340092.1 1947249..1947860(-) (hapR) [Vibrio metoecus strain 2011V-1015]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKSNLQTLCKEMVKLTMNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGDQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=408379 GPY06_RS14880 WP_000340092.1 1947249..1947860(-) (hapR) [Vibrio metoecus strain 2011V-1015]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTGTCGCCACAAAAACGTAAACTGCAACTGATGGAAATCGCATT
AGAAGTGTTTGCAAAGCGTGGTATAGGCCGCGGTGGTCACGCAGACATCGCAGAGATTGCGCAAGTCTCAGTAGCAACGG
TGTTTAACTACTTTCCAACTCGCGAAGACTTAGTCGACGATGTACTGAATTTTGTGGTTCGCCAATATTCCAACTTCCTC
ACCGATCACATCGATCTGGACTTGGATGTTAAAAGCAACCTACAAACATTGTGCAAAGAGATGGTCAAACTGACCATGAA
CGACTGCCATTGGCTAAAAGTATGGTTTGAATGGAGCGCATCGACTCGTGATGAGGTATGGCCGTTGTTTGTTTCGACGA
ACCGTACTAATCAGCTACTGATCAAAAACATGTTCATCAAAGCCATGGAGCGTGGTGAGTTGTGTGAAAAACATGATGTA
GACAATATGGCGAGCTTGTTCCACGGCATCTTCTACTCCATCTTCTTGCAAGTAAACCGCTTAGGTGATCAGGAAGCCGT
GTATAAATTGGTCGATAGCTATCTCAATATGTTGTGTATCTACAAAAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.232

97.537

0.714

Multiple sequence alignment