Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   H0A38_RS05995 Genome accession   NZ_CP059048
Coordinates   1232055..1233125 (-) Length   356 a.a.
NCBI ID   WP_003131037.1    Uniprot ID   Q9CG78
Organism   Lactococcus lactis strain LAC460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1227055..1238125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS05980 (H0A38_05940) dprA 1227353..1228201 (+) 849 WP_012897825.1 DNA-processing protein DprA Machinery gene
  H0A38_RS05985 (H0A38_05945) topA 1228463..1230595 (+) 2133 WP_003131148.1 type I DNA topoisomerase -
  H0A38_RS05990 (H0A38_05950) trmFO 1230667..1232010 (+) 1344 WP_033899770.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  H0A38_RS05995 (H0A38_05955) xerS 1232055..1233125 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  H0A38_RS06000 (H0A38_05960) - 1233609..1233896 (-) 288 WP_015426413.1 hypothetical protein -
  H0A38_RS06005 (H0A38_05965) xerS 1233980..1235035 (-) 1056 WP_226319212.1 tyrosine recombinase XerS Machinery gene
  H0A38_RS06010 (H0A38_05970) - 1235773..1236576 (-) 804 WP_226319213.1 HAD family hydrolase -
  H0A38_RS06015 (H0A38_05975) - 1236586..1237287 (-) 702 WP_139916784.1 DeoR/GlpR family DNA-binding transcription regulator -
  H0A38_RS12055 - 1237554..1237727 (-) 174 WP_404809782.1 hypothetical protein -
  H0A38_RS12060 - 1237752..1237907 (-) 156 Protein_1164 DNA recombination/repair protein RecA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41397.21 Da        Isoelectric Point: 9.6568

>NTDB_id=408345 H0A38_RS05995 WP_003131037.1 1232055..1233125(-) (xerS) [Lactococcus lactis strain LAC460]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=408345 H0A38_RS05995 WP_003131037.1 1232055..1233125(-) (xerS) [Lactococcus lactis strain LAC460]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CG78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767

Multiple sequence alignment