Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY06_RS00130 Genome accession   NZ_CP046819
Coordinates   27049..29097 (-) Length   682 a.a.
NCBI ID   WP_158118883.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 22049..34097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS00115 clcA 23161..24567 (+) 1407 WP_158118882.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY06_RS00120 - 24671..25633 (+) 963 WP_055028175.1 TDT family transporter -
  GPY06_RS00125 cqsA 25830..26999 (+) 1170 WP_055030498.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY06_RS00130 cqsS 27049..29097 (-) 2049 WP_158118883.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  GPY06_RS00135 - 29209..32250 (-) 3042 WP_158118884.1 AAA family ATPase -
  GPY06_RS00140 - 32252..33391 (-) 1140 WP_158118885.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77866.77 Da        Isoelectric Point: 5.1220

>NTDB_id=408342 GPY06_RS00130 WP_158118883.1 27049..29097(-) (cqsS) [Vibrio metoecus strain 2011V-1015]
MDVIKKVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQVYENLGLRCAAAVLFAGLAFRGSFPKKWQRYMPHYFLLTIG
FCLPFFFCFMMLMNDWSTIWAMSFMASIFLHILLVHDTKVMALQAIFSVLMAYLAVYGFTDFRPSTLIEWPYIPVFLFTY
VFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMIPKPQAAAQAAYPLDAQELDLLHQILNEADD
VIYSGNNTIDLLLTSIDENRVSTASFKKYSAADVIEKALKTFPYKNVADQHAVQLEVIQPFDFFGSDTLLSYALFNLLKN
AFYYQKEQFSVRIQIEQSDECNLIKVRDNGVGLASEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGSIRCFSQQGE
WTEFVLAFPRYDSDVVQDIKADLLKSKSLIYIGSNQAIVRELNQLALEDEFKFTAISAVQAVRRQDYEFEFDLILLDLDE
ATAQGELLPKLEGTLSFTEGCIGYVYDPAKEYAVNINRYLHIQPISIHAVLRKTRNIIDRLLFEQDSLLMNRNAIPVQKS
RHERRILVVDDNQSIRTFTSILLEQQGYEVIQANDGSEVLTHMDEHTIDLVLMDIEMPNVGGLEATHLIRSSDRAYKNIP
IIGYTGDNSPKTLALIQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=408342 GPY06_RS00130 WP_158118883.1 27049..29097(-) (cqsS) [Vibrio metoecus strain 2011V-1015]
ATGGATGTGATAAAGAAAGTTTACCAGTACGCAGAACCCAATCTTTCTTTAGTAGGATGGATGGGGATGCTTGGCTTTCC
AGCCTACTATTTCATTTGGGAATACTGGTTTCCACAAGTCTATGAGAACTTAGGTTTGCGCTGTGCTGCTGCAGTCTTGT
TCGCAGGGCTGGCGTTTCGTGGCTCATTCCCCAAAAAATGGCAGCGCTACATGCCGCACTATTTTTTGTTGACCATAGGC
TTCTGTTTGCCTTTTTTCTTTTGTTTCATGATGTTAATGAACGACTGGTCAACGATTTGGGCCATGTCGTTCATGGCATC
GATATTTCTGCACATCTTACTTGTGCATGATACAAAAGTGATGGCACTACAAGCTATCTTCTCTGTGTTGATGGCTTACC
TTGCAGTGTATGGCTTTACGGATTTTCGTCCCTCAACCTTGATTGAGTGGCCGTATATTCCAGTTTTTTTGTTTACTTAT
GTTTTTGGCAATCTGTGTTTCTTTCGCAATCAGATTTCTCATGAAACCAAAGTCTCCATTGCTAAAACCTTTGGGGCTGG
GATTGCGCATGAAATGCGTAATCCACTCAGTGCACTCAAAACGTCTATCGATGTTATTCGGACCATGATCCCAAAACCAC
AAGCGGCGGCTCAAGCTGCATACCCGTTGGATGCGCAAGAACTGGATCTATTACATCAGATTTTGAATGAAGCCGATGAT
GTTATCTATTCTGGAAATAACACCATTGATTTATTGCTGACGTCGATCGATGAAAACCGTGTTTCTACCGCGAGTTTTAA
AAAATACTCTGCAGCCGATGTTATCGAAAAAGCTCTGAAAACGTTCCCGTATAAAAATGTGGCGGATCAGCACGCTGTTC
AGCTTGAAGTTATCCAACCGTTTGATTTTTTTGGCAGTGATACGTTATTGAGTTATGCATTGTTTAACTTATTGAAAAAT
GCCTTTTATTACCAAAAAGAACAATTCTCTGTGCGGATTCAAATTGAACAAAGTGACGAGTGTAACCTGATTAAAGTTCG
TGATAACGGTGTCGGGCTCGCATCTGAAATGCTGGAAGATATTTTCCGTGATTTTTACACTTTCGGTAAAAATGGCAGCT
ATGGGCTTGGCTTACCATTTTGTCGAAAAGTGATGACCGCTTTTGGTGGCAGTATTCGTTGTTTTTCACAGCAAGGTGAA
TGGACGGAGTTTGTACTGGCGTTCCCTCGTTACGATTCTGATGTGGTACAAGACATTAAAGCGGATTTATTAAAGTCTAA
ATCTTTGATTTATATTGGGTCAAACCAAGCGATTGTTCGAGAGCTGAATCAATTAGCGCTAGAAGATGAGTTTAAATTCA
CGGCTATTTCTGCTGTACAGGCGGTGAGACGACAAGATTACGAATTTGAGTTTGATCTGATTTTGCTGGATTTGGATGAG
GCGACAGCGCAAGGCGAATTACTTCCTAAGCTGGAAGGCACATTAAGTTTTACAGAAGGCTGCATTGGCTATGTGTATGA
TCCGGCCAAAGAGTATGCCGTTAATATCAATCGATACTTACATATTCAACCGATAAGTATCCATGCGGTGCTTCGTAAAA
CCAGAAATATCATAGATCGTTTATTGTTTGAACAAGATTCACTGTTGATGAATCGTAACGCGATTCCGGTGCAGAAGAGT
CGTCATGAGCGGCGAATTCTGGTGGTGGATGACAATCAATCCATCCGCACATTTACGTCTATCCTACTTGAACAGCAAGG
ATACGAAGTAATACAAGCGAATGATGGCAGCGAAGTCCTCACTCATATGGATGAACACACGATTGATCTGGTATTGATGG
ATATTGAAATGCCGAATGTGGGTGGATTAGAGGCCACTCACTTAATTCGCAGCTCTGATCGCGCTTATAAAAACATCCCA
ATTATAGGTTATACCGGTGATAACAGCCCGAAAACATTAGCGTTGATACAGACGTCGGGGATGAATGATTTTATTGTTAA
ACCCGCCGATCGTGATGTATTACTCAATAAAGTTGCAGCGTGGGTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-409)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

87.683

100

0.877

Multiple sequence alignment