Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY06_RS00125 Genome accession   NZ_CP046819
Coordinates   25830..26999 (+) Length   389 a.a.
NCBI ID   WP_055030498.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 20830..31999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS00110 - 21704..22693 (-) 990 WP_158118881.1 CobW family GTP-binding protein -
  GPY06_RS00115 clcA 23161..24567 (+) 1407 WP_158118882.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY06_RS00120 - 24671..25633 (+) 963 WP_055028175.1 TDT family transporter -
  GPY06_RS00125 cqsA 25830..26999 (+) 1170 WP_055030498.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY06_RS00130 cqsS 27049..29097 (-) 2049 WP_158118883.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43617.82 Da        Isoelectric Point: 6.1813

>NTDB_id=408341 GPY06_RS00125 WP_055030498.1 25830..26999(+) (cqsA) [Vibrio metoecus strain 2011V-1015]
MNRPQLPDFIQDKISHYIENYFDINKNGKHLVLGKHASSDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPLLEKRLAQFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGIRYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTIGTIAPLAELVKISQEFGCALVVDESHSLGTHGPKGAGLLAELNLTSQVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIECADIRRDHLERMAKKLRIGLTQLGITIRSESQIIGL
ETGDERNTEKVRDFLENNGVFGSVFCRPATSKNKNIIRLSLNSDVTEEEISKIIEICSDAVKCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=408341 GPY06_RS00125 WP_055030498.1 25830..26999(+) (cqsA) [Vibrio metoecus strain 2011V-1015]
ATGAATAGACCACAACTTCCTGATTTTATTCAGGATAAGATAAGTCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTCGTATTAGGTAAACATGCCAGCAGTGATGACATTATTTTGCAAAGTAATGACTATTTAGCGTTAGCAA
ATCATCCATTGATTAAAGCTCGCTTAGCTAAATCATTACTGGAAGAGCAACAAAGTTTATTTATGTCAGCATCATTTTTA
CAAAATGATTATGACAAACCGTTGCTTGAAAAACGCTTAGCCCAGTTCACGGGGTTTGATGAGTGTTTATTATCTCAATC
AGGTTGGAACGCGAATGTGGGTTTACTGCAAACCATCTGCCAACCCAATACGAATGTTTACATCGATTTCTTTGCTCACA
TGTCATTATGGGAAGGAATACGCTACGCCAATGCTCAGGCGCACCCTTTTATGCATAACAACTGTGACCACTTGCGCATG
CTGATTCAACGTCATGGGCCAGGAATCATCGTGGTTGACTCGATTTACAGCACCATTGGAACCATTGCTCCATTAGCTGA
GTTGGTAAAAATTAGCCAAGAGTTTGGCTGCGCTTTAGTGGTGGATGAGTCCCACTCGCTAGGCACACATGGACCTAAAG
GTGCAGGATTATTGGCTGAATTGAACCTCACCTCACAGGTTCATTTTATGACAGCCAGTTTGGCGAAAACTTTTGCTTAT
CGGGCTGGAGCCATCTGGTGCAATAATGAGGTTAATCGATGTGTTCCTTTTATTAGTTATCCCGCTATATTCAGTTCAAC
GTTACTACCCTATGAAGCAGCTGGATTAGAAACCACATTAGAGATTATTGAATGTGCCGATATTAGACGGGATCACTTAG
AACGTATGGCAAAAAAATTACGGATTGGTTTAACCCAATTAGGGATAACGATCCGCAGTGAAAGCCAGATTATTGGCTTA
GAAACCGGTGATGAGAGAAATACGGAAAAAGTTCGTGACTTTTTAGAAAATAACGGCGTGTTTGGCTCTGTATTTTGTCG
TCCTGCGACCTCAAAAAATAAGAATATTATTCGCTTATCTCTCAATAGTGATGTAACTGAAGAAGAGATTTCAAAAATAA
TTGAAATTTGCTCTGACGCAGTGAAATGTGGTGATTTTTATTTTCGATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.517

100

0.915

Multiple sequence alignment