Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   GPX95_RS05075 Genome accession   NZ_CP046817
Coordinates   1145848..1146459 (+) Length   203 a.a.
NCBI ID   WP_000340092.1    Uniprot ID   -
Organism   Vibrio metoecus strain 06-2478     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140848..1151459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS05055 - 1141372..1142289 (-) 918 WP_055031740.1 ABC transporter ATP-binding protein -
  GPX95_RS05060 - 1142468..1144120 (-) 1653 WP_158160057.1 SulP family inorganic anion transporter -
  GPX95_RS05065 can 1144267..1144935 (+) 669 WP_001114114.1 carbonate dehydratase -
  GPX95_RS05070 hpt 1145021..1145554 (-) 534 WP_000683344.1 hypoxanthine phosphoribosyltransferase -
  GPX95_RS05075 hapR 1145848..1146459 (+) 612 WP_000340092.1 quorum-sensing master transcriptional regulator HapR Regulator
  GPX95_RS05080 rsmI 1146537..1147403 (-) 867 WP_055031741.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GPX95_RS05085 - 1147473..1149278 (+) 1806 WP_001015485.1 penicillin-binding protein activator -
  GPX95_RS05090 - 1149265..1149633 (+) 369 WP_055031742.1 YraN family protein -
  GPX95_RS05095 - 1149637..1150227 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  GPX95_RS05100 - 1150230..1150799 (+) 570 WP_000835997.1 BON domain-containing protein -
  GPX95_RS05105 sspB 1150873..1151337 (-) 465 WP_055027857.1 ClpXP protease specificity-enhancing factor -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23689.36 Da        Isoelectric Point: 6.6352

>NTDB_id=408302 GPX95_RS05075 WP_000340092.1 1145848..1146459(+) (hapR) [Vibrio metoecus strain 06-2478]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKSNLQTLCKEMVKLTMNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGDQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=408302 GPX95_RS05075 WP_000340092.1 1145848..1146459(+) (hapR) [Vibrio metoecus strain 06-2478]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTGTCGCCACAAAAACGTAAACTGCAACTGATGGAAATCGCATT
AGAAGTGTTTGCAAAGCGTGGTATAGGCCGCGGTGGTCACGCAGACATCGCAGAGATTGCGCAAGTCTCAGTAGCAACGG
TGTTTAACTACTTTCCAACTCGCGAAGACTTAGTCGACGATGTACTGAATTTTGTGGTTCGCCAATATTCCAACTTCCTC
ACCGATCACATCGATCTGGACTTGGATGTTAAAAGCAACCTACAAACATTGTGCAAAGAGATGGTCAAACTGACCATGAA
CGACTGCCATTGGCTAAAAGTATGGTTTGAATGGAGCGCATCGACTCGTGATGAGGTATGGCCGTTGTTTGTTTCGACGA
ACCGTACTAATCAGCTACTGATCAAAAACATGTTCATCAAAGCCATGGAGCGTGGTGAGTTGTGTGAAAAACATGATGTA
GACAATATGGCGAGCTTGTTCCACGGCATCTTCTACTCCATCTTCTTGCAAGTAAACCGCTTAGGTGATCAGGAAGCCGT
GTATAAATTGGTCGATAGCTATCTCAATATGTTGTGTATCTACAAAAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.232

97.537

0.714

Multiple sequence alignment