Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPX87_RS13815 Genome accession   NZ_CP046816
Coordinates   213486..215534 (-) Length   682 a.a.
NCBI ID   WP_078925022.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 208486..220534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS13805 - 209184..211913 (+) 2730 WP_078925024.1 EAL domain-containing protein -
  GPX87_RS13810 cqsA 212240..213421 (+) 1182 WP_078925023.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX87_RS13815 cqsS 213486..215534 (-) 2049 WP_078925022.1 hybrid sensor histidine kinase/response regulator Regulator
  GPX87_RS13820 - 215571..218615 (-) 3045 WP_078925021.1 SMC family ATPase -
  GPX87_RS13825 - 218618..219760 (-) 1143 WP_078925020.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78923.85 Da        Isoelectric Point: 5.7761

>NTDB_id=408294 GPX87_RS13815 WP_078925022.1 213486..215534(-) (cqsS) [Vibrio cincinnatiensis strain 1398-82]
MNAIKKIYQYAEPNLTLVGWMGLIGFPVYYYVWAYLFPQPYESLGLRSFCSFLFAGIAFRHSLPKVLHRYLPVYYLFSIG
FCLPFFFFYMMLMNSWSTEWAMSFMASIFLHILLVHETKVMLMQALVASLAAYIIAYSVMDTEPSQLISLTYIPIFIFTY
VFGNLFYFRNQISHESKVSIAKSFGAGIAHEMRNPLSALKSSIDVFRSILPSTNSKNDNYTLTAQELAQLQEVLNHADEV
IHSGNETIDLLLTSIDQNRVSTSTFKKHSAAAIVNNAIRSFSYPKMLDKSRVFATIEDEFDFLGSDTLLKFALYNLLKNA
FYYQNSESFRIDIDVKRQAGKNLIIVRDNGVGIAPEQLDEIFKDFYTFGKNNSYGLGLPFCRKVMRSFGGSIHCRSVLGE
WTEFILTFPDYDSERVKQIKLDLMKSKSVLYIGEEDIIYHHLNELAFYQGFTMYSVNVEEAIHREEFEFEFDIILVSLNK
LSSQWDKLSLLENKLHFTEAKIGYLYDKNHHYPVNISRYLTVYPIEMHQLLLEHSLIMDQLFFEIEESSVNRNQIKTPEV
CYQRRILLVDDNESLRIFSALLLEKQGYEVFQANNGKQALDIISTESVDLIIMDLDMPVMNGFDTTKAIRHLDADYHHVP
IIGYTGDDRSETISEIYKIGMNDYIVKPADKEILLQKIANWL

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=408294 GPX87_RS13815 WP_078925022.1 213486..215534(-) (cqsS) [Vibrio cincinnatiensis strain 1398-82]
ATGAATGCAATAAAAAAAATATACCAATATGCAGAGCCAAATCTAACGTTAGTCGGATGGATGGGGCTGATCGGTTTTCC
AGTTTATTACTATGTTTGGGCCTATCTTTTCCCGCAGCCATATGAGTCACTTGGGCTGCGTAGTTTTTGTTCGTTCCTGT
TTGCCGGTATCGCTTTTCGCCACTCTTTGCCTAAGGTGTTACACCGTTATTTACCCGTATATTATCTGTTCTCTATTGGA
TTTTGCTTACCTTTTTTCTTTTTCTATATGATGTTAATGAATAGCTGGTCCACAGAGTGGGCCATGTCCTTTATGGCCTC
TATTTTTTTACATATTTTACTGGTGCATGAAACGAAAGTGATGCTAATGCAAGCTTTGGTTGCATCACTCGCTGCTTATA
TTATTGCTTATTCTGTAATGGATACTGAACCTAGCCAGCTTATTTCATTAACTTATATTCCAATTTTTATTTTTACCTAT
GTATTTGGTAACTTATTTTATTTTCGGAATCAGATTTCTCATGAAAGCAAAGTGTCCATTGCAAAGTCTTTTGGTGCAGG
GATTGCCCATGAGATGCGTAACCCGCTGAGTGCATTAAAGTCATCGATAGATGTCTTCCGTTCTATTTTGCCGAGCACGA
ACTCAAAAAATGATAATTATACATTAACAGCTCAAGAGTTAGCCCAACTGCAAGAGGTGTTAAATCATGCCGATGAAGTG
ATCCATTCGGGTAATGAGACCATCGATTTACTACTGACCTCGATAGATCAAAATCGAGTGTCGACATCAACGTTCAAAAA
GCATTCAGCCGCCGCAATCGTAAATAATGCGATCCGTTCATTTTCCTATCCAAAAATGTTAGACAAGTCGAGGGTGTTTG
CAACGATTGAAGATGAGTTTGATTTTTTAGGTAGTGATACCTTATTAAAGTTTGCCTTGTATAATCTATTGAAGAATGCA
TTTTATTACCAAAATAGTGAGTCTTTTAGAATTGATATTGACGTGAAGCGGCAAGCTGGAAAAAATCTGATCATAGTCAG
AGATAATGGTGTTGGAATCGCACCTGAGCAACTGGATGAAATTTTTAAAGACTTTTATACGTTTGGTAAAAATAATAGTT
ATGGCTTAGGGCTACCTTTTTGCCGAAAAGTGATGCGCTCTTTTGGTGGGAGTATCCACTGTCGTTCAGTCTTGGGAGAA
TGGACCGAATTTATATTGACCTTTCCTGATTATGATTCTGAGCGAGTAAAACAAATTAAATTGGATTTAATGAAGTCTAA
ATCTGTTCTCTATATTGGTGAGGAGGACATTATTTACCACCATTTGAATGAACTGGCTTTTTATCAAGGCTTTACAATGT
ATTCTGTCAATGTTGAAGAAGCGATACATCGAGAAGAATTTGAATTCGAGTTTGATATTATTCTGGTTAGCCTAAATAAA
CTCTCTTCACAATGGGATAAGCTGAGTTTATTAGAAAATAAATTACATTTTACAGAGGCAAAAATTGGATACTTATATGA
TAAGAATCATCATTATCCGGTTAATATTTCACGTTATTTAACCGTGTATCCAATTGAAATGCACCAGCTATTGCTTGAAC
ATTCATTAATAATGGATCAGCTTTTTTTTGAAATAGAGGAAAGTTCGGTTAATAGAAATCAAATTAAAACGCCTGAAGTC
TGCTATCAACGGCGAATCTTATTGGTGGATGATAATGAATCATTGCGTATTTTTTCTGCATTATTATTGGAAAAACAAGG
CTATGAAGTTTTTCAGGCCAATAATGGTAAACAGGCATTAGATATTATTTCAACTGAAAGTGTGGATTTAATTATCATGG
ACCTTGATATGCCGGTAATGAATGGTTTCGATACCACAAAGGCTATCCGTCATTTAGATGCAGACTATCATCATGTTCCT
ATTATTGGATATACAGGCGATGATCGTTCAGAAACGATTTCTGAGATTTACAAAATAGGCATGAATGATTATATCGTTAA
GCCAGCAGATAAAGAGATTCTTTTGCAAAAAATAGCAAACTGGTTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

55.93

100

0.56

Multiple sequence alignment