Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPX87_RS13810 Genome accession   NZ_CP046816
Coordinates   212240..213421 (+) Length   393 a.a.
NCBI ID   WP_078925023.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 207240..218421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS13800 - 208161..209177 (+) 1017 WP_078925025.1 tripartite tricarboxylate transporter substrate binding protein -
  GPX87_RS13805 - 209184..211913 (+) 2730 WP_078925024.1 EAL domain-containing protein -
  GPX87_RS13810 cqsA 212240..213421 (+) 1182 WP_078925023.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPX87_RS13815 cqsS 213486..215534 (-) 2049 WP_078925022.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43932.31 Da        Isoelectric Point: 6.9058

>NTDB_id=408293 GPX87_RS13810 WP_078925023.1 212240..213421(+) (cqsA) [Vibrio cincinnatiensis strain 1398-82]
MKYDAKHTRLPEFIQTRLNLFIHDLIESNQNGKHLVLGKRPAENDIILQSNDYLSLSNHPVIKARLKKAIDESHDSLFMS
GIFLQDTHTKPPLEQQLADFAQFDTCLLSQSGWNANTALLQTICSPETPVYIDFFAHMSMWEGARYANAQLHPFMHNNCH
HLIKLIKRHGPGLIAVDSIYSTIGTMAPLTELVTIAKQHHCAILVDESHSLGVYGPHGSGLLCELELSGQVDFMTVSLAK
TFAYRAGAIWANNNVDKCIPFVGYPAIFSSTILPYEVEALSATLAVIQESDDKRDQLARHAKTLRSALVKLGFTIRSQSQ
IIALETGDERNTEKVRDYLEEHGVFGAVFCRPATAKNKNIIRLSLNSSLTQEEIDKIIHVCGLAINNPNLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=408293 GPX87_RS13810 WP_078925023.1 212240..213421(+) (cqsA) [Vibrio cincinnatiensis strain 1398-82]
ATGAAATACGATGCCAAACATACGCGTCTACCTGAGTTTATTCAAACGCGTTTAAACCTATTTATCCATGATCTTATTGA
AAGCAATCAAAATGGAAAGCATCTTGTATTAGGGAAAAGACCCGCAGAGAATGACATTATTCTACAAAGTAATGACTACC
TCAGCTTATCTAATCATCCTGTGATTAAAGCTCGACTGAAAAAGGCCATTGATGAAAGTCATGATAGCCTTTTTATGTCA
GGAATTTTTTTACAAGATACTCACACTAAACCACCACTAGAGCAGCAGTTAGCCGACTTTGCTCAATTTGATACTTGCTT
ATTATCGCAATCAGGTTGGAATGCCAATACCGCGTTATTACAAACCATCTGCTCTCCAGAAACGCCGGTCTATATTGATT
TTTTTGCTCATATGTCCATGTGGGAAGGAGCACGATACGCTAATGCACAACTGCACCCCTTCATGCATAATAATTGTCAT
CATTTAATTAAGTTAATAAAAAGACACGGCCCTGGGCTGATTGCTGTTGATTCTATCTATAGCACCATAGGGACTATGGC
ACCATTGACAGAGCTGGTCACGATTGCAAAACAGCACCATTGCGCAATTTTAGTGGATGAATCTCATTCATTAGGCGTTT
ATGGGCCACATGGTTCGGGGCTACTATGTGAGCTAGAGTTATCAGGGCAAGTCGACTTTATGACGGTCAGCCTAGCCAAA
ACCTTCGCTTATCGAGCGGGGGCAATATGGGCAAACAATAATGTGGATAAATGTATTCCCTTTGTTGGTTACCCAGCTAT
CTTTAGCTCGACCATTCTTCCCTATGAAGTCGAAGCCTTAAGTGCAACCTTAGCGGTGATACAAGAGTCCGATGATAAAC
GGGATCAACTTGCTCGTCATGCCAAAACATTAAGATCAGCATTAGTTAAATTAGGATTTACTATACGTAGTCAATCTCAA
ATTATTGCTTTAGAAACTGGAGATGAAAGAAATACAGAAAAAGTCAGAGATTACTTAGAAGAACATGGGGTTTTTGGTGC
AGTGTTCTGTCGTCCTGCGACCGCCAAGAACAAAAATATTATCCGTTTATCTCTGAATAGTTCACTCACTCAAGAAGAGA
TAGACAAAATTATTCATGTTTGTGGCTTAGCCATCAACAATCCAAACTTATATTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

66.494

97.964

0.651

Multiple sequence alignment