Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPX87_RS03895 Genome accession   NZ_CP046815
Coordinates   833432..834064 (+) Length   210 a.a.
NCBI ID   WP_078926043.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 828432..839064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS03870 panC 828756..829637 (+) 882 WP_078926048.1 pantoate--beta-alanine ligase -
  GPX87_RS03875 - 829793..830563 (-) 771 WP_078926047.1 ABC transporter permease -
  GPX87_RS03880 - 830563..831486 (-) 924 WP_078926046.1 ABC transporter ATP-binding protein -
  GPX87_RS03885 can 831816..832484 (+) 669 WP_078926045.1 carbonate dehydratase -
  GPX87_RS03890 hpt 832560..833090 (-) 531 WP_078926044.1 hypoxanthine phosphoribosyltransferase -
  GPX87_RS03895 opaR 833432..834064 (+) 633 WP_078926043.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GPX87_RS03900 lpdA 834136..835563 (-) 1428 WP_078926042.1 dihydrolipoyl dehydrogenase -
  GPX87_RS03905 aceF 835817..837703 (-) 1887 WP_078926041.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24217.79 Da        Isoelectric Point: 5.6489

>NTDB_id=408256 GPX87_RS03895 WP_078926043.1 833432..834064(+) (opaR) [Vibrio cincinnatiensis strain 1398-82]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVRQFSNFL
TDQIDLDLDAKENMHNIASAMVNLAIDDCYWLKVWFEWSASTREEVWPLFVSSNKTNQLLIRNIFVKAIERGEVCAQLDA
ENLAMLFHGVCYSLFVQANRVRDEQKVCQLVNHYLDMLCIYNREHLSIAS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408256 GPX87_RS03895 WP_078926043.1 833432..834064(+) (opaR) [Vibrio cincinnatiensis strain 1398-82]
ATGGACGCATCTATTGAGAAACGCCCCAGAACACGGCTTTCTCCGCAAAAACGTAAACAACAACTCATGGAAATCGCACT
GGAAGTGTTTGCCAAACGAGGGATTGGTCGTGGAGGGCATGCAGATATCGCTGAAATTGCCCAAGTATCTGTGGCAACCG
TCTTTAACTACTTTCCTACTCGGGAAGATTTGGTGGACGATGTACTAACCTTTGTTGTTCGTCAATTCTCTAACTTTCTC
ACCGATCAGATTGATCTTGACCTCGATGCTAAAGAAAATATGCACAACATTGCTTCAGCAATGGTAAATCTGGCTATTGA
TGATTGTTATTGGCTAAAAGTATGGTTTGAATGGAGCGCTTCAACTCGAGAGGAAGTCTGGCCTTTATTTGTCTCGAGCA
ATAAAACGAACCAGTTATTGATTAGAAATATTTTTGTCAAAGCTATCGAGCGTGGTGAAGTTTGTGCTCAACTTGATGCC
GAAAATTTAGCGATGCTATTTCACGGCGTTTGTTATTCTCTCTTTGTACAAGCCAACCGAGTGCGTGATGAACAAAAAGT
CTGCCAGTTAGTCAACCATTATTTAGATATGCTGTGCATCTATAACCGAGAACATTTATCTATCGCCTCTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

78.218

96.19

0.752
  hapR Vibrio cholerae C6706

76.119

95.714

0.729
  hapR Vibrio cholerae strain A1552

76.119

95.714

0.729

Multiple sequence alignment