Detailed information NTG0408255

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: GPX87_RS03715
• Genome accession: NZ_CP046815
• Coordinates: 782725..786114 (+)
• Length: 1129 a.a.
• NCBI ID: WP_078926078.1
• Uniprot ID: -
• Organism: Vibrio cincinnatiensis strain 1398-82
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 777725..791114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX87_RS03695	erpA	778031..778372 (-)	342	WP_078926152.1	iron-sulfur cluster insertion protein ErpA	-
GPX87_RS03700	hemL	778744..780036 (+)	1293	WP_078926082.1	glutamate-1-semialdehyde 2,1-aminomutase	-
GPX87_RS03705	-	780350..781435 (+)	1086	WP_078926080.1	AI-2E family transporter	-
GPX87_RS03710	rsmC	781501..782526 (+)	1026	WP_078926079.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
GPX87_RS03715	chiS	782725..786114 (+)	3390	WP_078926078.1	response regulator	Regulator
GPX87_RS03720	-	786884..788554 (+)	1671	WP_078926077.1	ABC transporter substrate-binding protein	-
GPX87_RS03725	-	788714..789700 (+)	987	WP_078926076.1	ABC transporter permease	-
GPX87_RS03730	-	789703..790728 (+)	1026	WP_078926075.1	ABC transporter permease	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 128239.19 Da
• Isoelectric Point: 6.4363

>NTDB_id=408255 GPX87_RS03715 WP_078926078.1 782725..786114(+) (chiS) [Vibrio cincinnatiensis strain 1398-82]
MFRFNRKQKFKRLQNTLMLAFLVLSLTPLTVTALFFLHSHSKDLQEQSTSHLLSVRDTKQQQVIDYLSAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGDDIEQARLHAQQRYIPGSGDQIKTSVLPKSSSYVGSERYRLLHKRYHSAYLELLKRSDF
DDILLVDLNGNVVYSIYKYDNYGTNLLTGRYKSSNLGTTFQHLEQIVTENRKLNEDYTPVVLSDFIEEEGQQYAWMGAPI
IQQGYLHSYAMFRLPNNGITKLISENNSDSSKRTLLVGQDQRSRILAHNQVDIKTSTDVINMALNGGRAVGTYKNTLGEK
HIAAYAPIKVKELDWAIVVELPEKEAFARVRQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAERVSAGDLDK
AIINTERQDEIGRLAVSFERMQRSIREKIQLIKSQNIELENNIQVIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIG
IAEALISGANGPINGAHKYQLDIIISSGQRLANLVDDLLDYHKMRYGHLDMELRAVNLASATQLVLALSSHLLGKKQIRI
INQVAENPIWVCADAQRLEQVLYNLIGNAIKYTSEGKIVISATQQEDHVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDSS
RYRQGAGLGLSISRQLIGLMDGSLYVSSQPMVGTTFSFTLPLATSEQIEHAQQTQMAHFQIPELTELEKDEENHLPENPD
GPLLLVADDEPVNLRVLKSFLRLEGYRVKTVQEGNEVLSSVKEEQPELLLLDIMMPGMNGYQICEQLRQDYDHAQLPIIM
LTALNQSDDRLKGFEVGANDYLSKPFNKQELAARIQAHLTASKAEQRRIENARLQKELKQRAMVEASLLETQGRLLEQLD
SAPEAILCLREDNKIRFANESAARLFKRSQEQLKRSDAEELIAPKYLLVEQEHYCGNIDIYVDDIRQHISADILRLPEGS
GFKAMYIFNVGGNINAARIHNLETALEALSSYAFEGDKDKLQQLKELGGEFTRIAEKVAGENQSKQELMRSVLVEAMSSA
LDYWEKVTGQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCKEQSPERTYIEVQRD
KLQKLLTTD

Nucleotide

• Length: 3390 bp

>NTDB_id=408255 GPX87_RS03715 WP_078926078.1 782725..786114(+) (chiS) [Vibrio cincinnatiensis strain 1398-82]
ATGTTCAGGTTTAATCGAAAACAGAAATTTAAACGTCTGCAAAATACGTTAATGTTGGCATTTTTAGTGCTTAGCCTTAC
CCCTCTCACTGTGACGGCGCTGTTTTTCCTTCATTCTCACAGCAAAGATTTACAGGAACAGAGCACTTCTCATCTGCTAT
CTGTACGCGATACCAAGCAACAACAAGTGATTGACTACCTAAGCGCGAAAGAATCTGAAGTGATGGGCTTTGTTCGTTCA
GAACTGGCTTATGCAAGTGGTGGGCGATTCTATGGCTTAGTCAACGCCTTTCAACGGTTAGGTGATGATATTGAGCAAGC
CCGCCTACATGCCCAACAACGCTATATCCCCGGATCCGGCGATCAAATCAAAACCTCTGTACTGCCTAAATCAAGCAGTT
ATGTGGGCAGTGAACGTTATCGCCTACTGCACAAACGCTACCATTCCGCTTATCTTGAACTTCTGAAACGCTCGGATTTC
GACGACATTTTATTGGTCGACCTCAATGGTAACGTGGTCTATTCCATTTACAAATATGACAATTATGGTACGAACCTACT
CACTGGGCGCTATAAAAGTTCGAACCTAGGAACCACATTTCAGCATTTAGAGCAAATCGTCACAGAAAATCGGAAGCTCA
ATGAAGATTATACCCCCGTCGTGTTATCCGATTTTATTGAAGAAGAGGGGCAGCAATACGCTTGGATGGGTGCCCCCATT
ATTCAACAAGGCTACCTACACAGTTATGCTATGTTTCGGCTGCCAAATAATGGGATAACAAAACTCATTTCTGAAAATAA
CAGCGATTCCTCAAAACGCACATTGCTGGTCGGGCAGGATCAGCGATCACGAATCCTAGCTCATAACCAAGTCGATATAA
AAACCAGTACCGATGTCATCAATATGGCACTCAATGGCGGTCGAGCCGTTGGAACCTATAAAAATACCTTAGGCGAGAAA
CACATTGCCGCCTATGCCCCGATAAAAGTGAAAGAGTTAGACTGGGCTATAGTCGTAGAGCTACCAGAGAAAGAAGCCTT
TGCGCGAGTTCGTCAATTAGAGAAATTGTTTATTTTTGCAATGCTCACCGCCATAATCCTCGTCGTGATCGCCTCTCACT
ACCTATCTAACTTCATCACCTCTCCGTTATTGAAACTGACATGGGCGGCCGAACGGGTTTCAGCCGGAGATCTGGATAAA
GCCATCATTAATACTGAACGCCAAGATGAAATTGGCCGGTTGGCGGTGAGCTTTGAACGAATGCAACGTTCAATTCGAGA
AAAAATTCAACTGATCAAATCGCAAAACATTGAGTTAGAAAATAATATCCAAGTCATCCGTAAACAAAATGACGAATTAC
AGTTAGCCAATAAACTTAAAGATGAGTTTCTTGCTACCACTTCACATGAATTACGTACCCCACTACATGGCATGATTGGC
ATCGCGGAAGCATTGATTTCTGGGGCAAATGGTCCCATTAATGGCGCACACAAGTATCAATTAGATATTATCATCAGCAG
TGGGCAACGTTTGGCTAATTTGGTAGATGATCTATTGGATTACCATAAAATGCGTTATGGCCATTTAGATATGGAGTTAC
GTGCAGTCAACCTTGCAAGTGCAACTCAACTCGTCTTAGCGCTCTCTAGCCATCTATTGGGGAAAAAACAAATTCGAATT
ATTAATCAAGTCGCTGAAAACCCCATTTGGGTGTGTGCAGATGCTCAGCGTCTTGAACAAGTACTCTATAACCTTATCGG
TAATGCGATTAAATATACCTCTGAAGGAAAAATTGTCATTTCCGCCACTCAGCAAGAAGATCACGTTCGAGTGCAAGTTG
TTGATACGGGGCAAGGCATCCCCGCTGAGCAACTGGAACATATTTTTGAACCTCTTATTCAAGCTGGGCACGATAGTAGC
CGTTACCGTCAAGGCGCGGGATTAGGCCTATCCATTAGCCGCCAATTAATCGGATTAATGGATGGATCTTTATATGTCAG
CAGCCAACCAATGGTGGGGACCACCTTTAGCTTCACTCTCCCACTTGCGACATCAGAACAGATAGAGCATGCCCAACAAA
CCCAAATGGCACATTTCCAAATACCAGAGTTAACGGAACTAGAGAAAGATGAAGAAAATCATCTGCCAGAAAATCCTGAT
GGACCTCTTCTTCTGGTTGCCGATGATGAACCCGTCAATTTACGGGTTCTCAAAAGTTTTTTACGCTTAGAAGGTTATCG
GGTCAAAACCGTACAAGAAGGCAATGAAGTACTATCAAGTGTAAAAGAAGAACAGCCAGAACTATTACTGCTCGATATCA
TGATGCCAGGCATGAACGGTTATCAAATCTGCGAACAACTACGCCAAGATTACGACCACGCTCAACTGCCCATCATTATG
CTCACCGCACTAAACCAGAGTGATGACCGATTGAAAGGCTTTGAAGTCGGTGCTAATGATTACTTATCCAAACCTTTCAA
TAAACAAGAGTTAGCCGCTCGTATTCAAGCACATTTAACCGCAAGTAAAGCTGAACAACGACGAATAGAAAATGCTCGGT
TACAAAAAGAACTAAAACAACGCGCCATGGTAGAAGCCAGCCTGCTTGAAACCCAAGGGCGGCTGTTAGAACAACTAGAT
TCCGCTCCCGAGGCCATTTTATGCCTTCGAGAAGATAATAAAATTCGCTTTGCGAATGAGTCTGCCGCCCGACTATTTAA
GCGAAGCCAAGAGCAACTGAAACGCTCCGATGCTGAAGAACTGATTGCCCCCAAATATTTACTGGTCGAACAAGAACACT
ACTGTGGCAATATTGATATCTATGTCGATGATATCAGACAGCATATTTCGGCCGACATCCTTCGACTTCCTGAAGGATCT
GGCTTTAAAGCTATGTACATCTTTAATGTCGGAGGCAATATTAATGCAGCCAGAATCCATAACCTAGAAACGGCACTAGA
AGCTTTATCCAGTTATGCCTTTGAAGGAGATAAAGACAAACTTCAGCAATTAAAAGAATTAGGAGGAGAATTTACTCGTA
TTGCCGAAAAAGTAGCCGGAGAGAACCAATCAAAACAGGAATTAATGCGATCAGTATTGGTCGAAGCGATGAGTAGTGCT
CTTGATTACTGGGAAAAAGTGACAGGGCAAAGTAAATTCACGTTTGCTGAACAAAGTGGTTTATGGCGCGTCTATTTAGA
CCGTAGTACGCTGCAAACCCGTACATTGGATAAATACCTGCGAATTGAAACTCTGCCGAAGACTCCTCGTTGGCGTACCG
TACTAAATTCACTGGATTATATTCTCGAACATTGCAAAGAGCAGTCCCCAGAGCGAACCTATATTGAAGTACAAAGAGAT
AAACTTCAAAAGCTACTCACCACAGACTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Response regulator receiver domain (Response_reg) (725-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	81.754	100	0.818