Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | GPY28_RS24840 | Genome accession | NZ_CP046814 |
| Coordinates | 3321283..3321798 (-) | Length | 171 a.a. |
| NCBI ID | WP_005382766.1 | Uniprot ID | A0A2I3CBC3 |
| Organism | Vibrio alginolyticus strain 2010V-1102 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3316283..3326798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY28_RS24825 | aroB | 3317664..3318764 (-) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
| GPY28_RS24830 | aroK | 3318797..3319315 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| GPY28_RS24835 | pilQ | 3319503..3321257 (-) | 1755 | WP_053350734.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPY28_RS24840 | pilP | 3321283..3321798 (-) | 516 | WP_005382766.1 | pilus assembly protein PilP | Machinery gene |
| GPY28_RS24845 | pilO | 3321788..3322381 (-) | 594 | WP_053350733.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY28_RS24850 | pilN | 3322374..3322949 (-) | 576 | WP_005381323.1 | PilN domain-containing protein | Machinery gene |
| GPY28_RS24855 | pilM | 3322933..3323949 (-) | 1017 | WP_017821733.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY28_RS24860 | - | 3324094..3326655 (+) | 2562 | WP_005381325.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19065.24 Da Isoelectric Point: 10.4342
>NTDB_id=408249 GPY28_RS24840 WP_005382766.1 3321283..3321798(-) (pilP) [Vibrio alginolyticus strain 2010V-1102]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=408249 GPY28_RS24840 WP_005382766.1 3321283..3321798(-) (pilP) [Vibrio alginolyticus strain 2010V-1102]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAGTATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAATTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAGTATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTGCACCCTTTGAATTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
84.795 |
100 |
0.848 |
| pilP | Vibrio cholerae strain A1552 |
56.977 |
100 |
0.573 |