Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GPY28_RS23450 Genome accession   NZ_CP046814
Coordinates   3049054..3049668 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2010V-1102     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3044054..3054668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY28_RS23430 - 3044339..3045256 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  GPY28_RS23435 - 3045507..3047177 (-) 1671 WP_085569816.1 SulP family inorganic anion transporter -
  GPY28_RS23440 can 3047459..3048127 (+) 669 WP_005379996.1 carbonate dehydratase -
  GPY28_RS23445 hpt 3048204..3048734 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  GPY28_RS23450 opaR 3049054..3049668 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  GPY28_RS23455 lpdA 3049814..3051241 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  GPY28_RS23460 aceF 3051509..3053401 (-) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=408234 GPY28_RS23450 WP_005379994.1 3049054..3049668(+) (opaR) [Vibrio alginolyticus strain 2010V-1102]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=408234 GPY28_RS23450 WP_005379994.1 3049054..3049668(+) (opaR) [Vibrio alginolyticus strain 2010V-1102]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTAGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment