Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SSUD9_RS10580 Genome accession   NC_017620
Coordinates   2163770..2164864 (+) Length   364 a.a.
NCBI ID   WP_002936177.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2158770..2169864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS10550 (SSUD9_2185) - 2158856..2159602 (-) 747 WP_013730689.1 BRO-N domain-containing protein -
  SSUD9_RS10555 (SSUD9_2186) - 2159621..2159848 (-) 228 WP_013730690.1 helix-turn-helix domain-containing protein -
  SSUD9_RS10560 (SSUD9_2187) - 2160002..2160715 (+) 714 WP_013730691.1 helix-turn-helix domain-containing protein -
  SSUD9_RS10565 (SSUD9_2188) - 2161079..2161909 (+) 831 WP_041179049.1 KilA-N domain-containing protein -
  SSUD9_RS10570 (SSUD9_2189) - 2162074..2163246 (+) 1173 WP_013730693.1 tyrosine-type recombinase/integrase -
  SSUD9_RS10575 (SSUD9_2190) yaaA 2163384..2163767 (+) 384 WP_014637235.1 S4 domain-containing protein YaaA -
  SSUD9_RS10580 (SSUD9_2191) recF 2163770..2164864 (+) 1095 WP_002936177.1 DNA replication/repair protein RecF Machinery gene
  SSUD9_RS10585 (SSUD9_2192) guaB 2165133..2166614 (-) 1482 WP_014637236.1 IMP dehydrogenase -
  SSUD9_RS10590 (SSUD9_2193) trpS 2166846..2167871 (-) 1026 WP_013730696.1 tryptophan--tRNA ligase -
  SSUD9_RS10595 (SSUD9_2195) - 2168226..2169098 (+) 873 WP_013730698.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42217.34 Da        Isoelectric Point: 7.2235

>NTDB_id=40820 SSUD9_RS10580 WP_002936177.1 2163770..2164864(+) (recF) [Streptococcus suis D9]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=40820 SSUD9_RS10580 WP_002936177.1 2163770..2164864(+) (recF) [Streptococcus suis D9]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.083

99.176

0.695
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442

Multiple sequence alignment